Vibrio caribbeanicus ATCC BAA-2122

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio caribbeanicus

Average proteome isoelectric point is 6.21

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4023 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|E3BNY5|E3BNY5_9VIBR Uncharacterized protein OS=Vibrio caribbeanicus ATCC BAA-2122 OX=796620 GN=VIBC2010_19110 PE=4 SV=1
MM1 pKa = 7.41SHH3 pKa = 6.51EE4 pKa = 4.59DD5 pKa = 3.36EE6 pKa = 4.41YY7 pKa = 11.8LSVEE11 pKa = 4.13EE12 pKa = 5.07LIEE15 pKa = 4.01IQKK18 pKa = 10.79EE19 pKa = 3.96EE20 pKa = 4.06TRR22 pKa = 11.84DD23 pKa = 3.25IIAALLEE30 pKa = 5.14DD31 pKa = 4.8GSDD34 pKa = 3.49PDD36 pKa = 3.36SLYY39 pKa = 10.83EE40 pKa = 4.15IEE42 pKa = 4.3HH43 pKa = 6.59HH44 pKa = 6.91LFAEE48 pKa = 4.2NFEE51 pKa = 4.42TLEE54 pKa = 4.15KK55 pKa = 10.81AVVEE59 pKa = 4.0AFKK62 pKa = 10.62MGFEE66 pKa = 4.02VLEE69 pKa = 4.38AEE71 pKa = 4.32EE72 pKa = 4.84TEE74 pKa = 5.32DD75 pKa = 4.16EE76 pKa = 4.91DD77 pKa = 5.29GNKK80 pKa = 9.92LLCCDD85 pKa = 3.51ATMEE89 pKa = 4.48SALDD93 pKa = 3.53ADD95 pKa = 5.37AIDD98 pKa = 4.04AQVEE102 pKa = 4.35KK103 pKa = 10.53LIHH106 pKa = 6.03LAEE109 pKa = 5.01KK110 pKa = 10.84YY111 pKa = 10.71DD112 pKa = 3.8IIYY115 pKa = 10.15DD116 pKa = 3.64GWGTYY121 pKa = 9.41YY122 pKa = 10.67EE123 pKa = 5.11GDD125 pKa = 3.39DD126 pKa = 3.52ALYY129 pKa = 10.28PEE131 pKa = 5.18EE132 pKa = 6.29DD133 pKa = 3.92DD134 pKa = 6.33DD135 pKa = 4.66EE136 pKa = 4.59

Molecular weight: 15.55 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|E3BH91|E3BH91_9VIBR ABC-type amino acid transport system permease component OS=Vibrio caribbeanicus ATCC BAA-2122 OX=796620 GN=VIBC2010_13386 PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.42RR12 pKa = 11.84KK13 pKa = 9.36RR14 pKa = 11.84SHH16 pKa = 6.15GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.44NGRR28 pKa = 11.84KK29 pKa = 9.39VINARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.22GRR39 pKa = 11.84ARR41 pKa = 11.84LSKK44 pKa = 10.83

Molecular weight: 5.15 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4023

0

4023

1268750

21

4662

315.4

35.18

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.715 ± 0.035

1.061 ± 0.015

5.512 ± 0.036

6.345 ± 0.037

4.285 ± 0.027

6.626 ± 0.041

2.248 ± 0.022

6.787 ± 0.034

5.668 ± 0.028

10.266 ± 0.048

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.559 ± 0.02

4.533 ± 0.03

3.738 ± 0.022

4.452 ± 0.028

4.459 ± 0.034

7.307 ± 0.036

5.301 ± 0.034

6.786 ± 0.039

1.225 ± 0.013

3.126 ± 0.025
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski