Amino acid dipepetide frequency for Capybara microvirus Cap3_SP_469

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
6.237AlaAla: 6.237 ± 3.152
2.079AlaCys: 2.079 ± 0.801
4.158AlaAsp: 4.158 ± 1.482
3.465AlaGlu: 3.465 ± 1.045
0.0AlaPhe: 0.0 ± 0.0
2.772AlaGly: 2.772 ± 2.124
0.693AlaHis: 0.693 ± 0.462
1.386AlaIle: 1.386 ± 1.066
0.693AlaLys: 0.693 ± 0.462
3.465AlaLeu: 3.465 ± 1.704
2.079AlaMet: 2.079 ± 2.024
2.772AlaAsn: 2.772 ± 2.007
0.0AlaPro: 0.0 ± 0.0
4.158AlaGln: 4.158 ± 1.79
2.772AlaArg: 2.772 ± 1.197
6.237AlaSer: 6.237 ± 2.288
2.772AlaThr: 2.772 ± 1.285
0.693AlaVal: 0.693 ± 1.047
1.386AlaTrp: 1.386 ± 0.925
2.772AlaTyr: 2.772 ± 0.765
0.0AlaXaa: 0.0 ± 0.0
Cys
1.386CysAla: 1.386 ± 0.917
0.0CysCys: 0.0 ± 0.0
3.465CysAsp: 3.465 ± 2.369
0.0CysGlu: 0.0 ± 0.0
0.0CysPhe: 0.0 ± 0.0
1.386CysGly: 1.386 ± 1.23
0.0CysHis: 0.0 ± 0.0
0.0CysIle: 0.0 ± 0.0
0.693CysLys: 0.693 ± 0.864
0.693CysLeu: 0.693 ± 0.615
0.693CysMet: 0.693 ± 0.615
0.693CysAsn: 0.693 ± 0.462
0.0CysPro: 0.0 ± 0.0
0.0CysGln: 0.0 ± 0.0
0.693CysArg: 0.693 ± 0.615
0.693CysSer: 0.693 ± 1.053
0.693CysThr: 0.693 ± 0.615
1.386CysVal: 1.386 ± 0.925
0.693CysTrp: 0.693 ± 0.615
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
4.158AspAla: 4.158 ± 0.952
0.0AspCys: 0.0 ± 0.0
4.158AspAsp: 4.158 ± 2.358
2.772AspGlu: 2.772 ± 1.361
3.465AspPhe: 3.465 ± 1.056
3.465AspGly: 3.465 ± 1.066
1.386AspHis: 1.386 ± 0.598
0.693AspIle: 0.693 ± 0.615
1.386AspLys: 1.386 ± 0.932
10.395AspLeu: 10.395 ± 3.149
0.0AspMet: 0.0 ± 0.0
5.544AspAsn: 5.544 ± 1.558
1.386AspPro: 1.386 ± 0.932
0.693AspGln: 0.693 ± 0.462
2.772AspArg: 2.772 ± 0.933
1.386AspSer: 1.386 ± 1.052
4.851AspThr: 4.851 ± 1.448
4.158AspVal: 4.158 ± 2.877
1.386AspTrp: 1.386 ± 0.827
4.851AspTyr: 4.851 ± 2.077
0.0AspXaa: 0.0 ± 0.0
Glu
3.465GluAla: 3.465 ± 0.563
1.386GluCys: 1.386 ± 1.105
2.079GluAsp: 2.079 ± 1.237
3.465GluGlu: 3.465 ± 1.623
4.851GluPhe: 4.851 ± 4.091
2.772GluGly: 2.772 ± 2.071
0.693GluHis: 0.693 ± 0.462
4.851GluIle: 4.851 ± 2.274
2.079GluLys: 2.079 ± 1.442
3.465GluLeu: 3.465 ± 1.695
0.693GluMet: 0.693 ± 1.011
3.465GluAsn: 3.465 ± 1.426
1.386GluPro: 1.386 ± 1.23
2.079GluGln: 2.079 ± 0.875
0.0GluArg: 0.0 ± 0.0
4.851GluSer: 4.851 ± 1.435
1.386GluThr: 1.386 ± 0.932
8.316GluVal: 8.316 ± 3.498
0.693GluTrp: 0.693 ± 0.462
4.851GluTyr: 4.851 ± 0.704
0.0GluXaa: 0.0 ± 0.0
Phe
0.693PheAla: 0.693 ± 0.462
0.0PheCys: 0.0 ± 0.0
3.465PheAsp: 3.465 ± 1.183
0.693PheGlu: 0.693 ± 0.864
3.465PhePhe: 3.465 ± 2.312
6.237PheGly: 6.237 ± 2.258
0.0PheHis: 0.0 ± 0.0
3.465PheIle: 3.465 ± 1.045
2.079PheLys: 2.079 ± 1.928
1.386PheLeu: 1.386 ± 0.917
1.386PheMet: 1.386 ± 0.598
7.623PheAsn: 7.623 ± 2.608
0.693PhePro: 0.693 ± 0.615
0.693PheGln: 0.693 ± 0.615
2.079PheArg: 2.079 ± 1.387
2.079PheSer: 2.079 ± 1.033
3.465PheThr: 3.465 ± 1.056
3.465PheVal: 3.465 ± 1.187
0.693PheTrp: 0.693 ± 0.462
2.079PheTyr: 2.079 ± 0.871
0.0PheXaa: 0.0 ± 0.0
Gly
1.386GlyAla: 1.386 ± 1.349
0.0GlyCys: 0.0 ± 0.0
6.237GlyAsp: 6.237 ± 2.269
4.158GlyGlu: 4.158 ± 1.137
2.079GlyPhe: 2.079 ± 0.949
5.544GlyGly: 5.544 ± 2.569
0.693GlyHis: 0.693 ± 0.615
4.158GlyIle: 4.158 ± 0.982
4.851GlyLys: 4.851 ± 2.311
6.93GlyLeu: 6.93 ± 1.79
1.386GlyMet: 1.386 ± 1.296
5.544GlyAsn: 5.544 ± 2.569
1.386GlyPro: 1.386 ± 0.925
2.079GlyGln: 2.079 ± 0.908
2.079GlyArg: 2.079 ± 1.387
6.237GlySer: 6.237 ± 2.792
6.93GlyThr: 6.93 ± 2.788
4.158GlyVal: 4.158 ± 1.482
1.386GlyTrp: 1.386 ± 0.653
3.465GlyTyr: 3.465 ± 1.692
0.0GlyXaa: 0.0 ± 0.0
His
0.0HisAla: 0.0 ± 0.0
0.693HisCys: 0.693 ± 0.615
0.693HisAsp: 0.693 ± 0.462
0.0HisGlu: 0.0 ± 0.0
0.693HisPhe: 0.693 ± 0.462
0.693HisGly: 0.693 ± 0.462
1.386HisHis: 1.386 ± 0.598
0.693HisIle: 0.693 ± 0.615
2.079HisLys: 2.079 ± 1.45
1.386HisLeu: 1.386 ± 1.23
0.693HisMet: 0.693 ± 0.427
1.386HisAsn: 1.386 ± 0.598
0.0HisPro: 0.0 ± 0.0
1.386HisGln: 1.386 ± 0.653
0.693HisArg: 0.693 ± 0.615
2.772HisSer: 2.772 ± 1.044
0.693HisThr: 0.693 ± 0.462
0.693HisVal: 0.693 ± 0.864
0.693HisTrp: 0.693 ± 0.462
1.386HisTyr: 1.386 ± 0.917
0.0HisXaa: 0.0 ± 0.0
Ile
4.851IleAla: 4.851 ± 2.004
1.386IleCys: 1.386 ± 0.884
1.386IleAsp: 1.386 ± 0.917
4.851IleGlu: 4.851 ± 2.508
0.693IlePhe: 0.693 ± 0.615
5.544IleGly: 5.544 ± 2.024
0.693IleHis: 0.693 ± 0.615
4.851IleIle: 4.851 ± 1.022
4.851IleLys: 4.851 ± 1.581
4.851IleLeu: 4.851 ± 1.991
0.693IleMet: 0.693 ± 0.575
2.079IleAsn: 2.079 ± 1.017
4.851IlePro: 4.851 ± 2.125
3.465IleGln: 3.465 ± 1.658
2.079IleArg: 2.079 ± 1.122
3.465IleSer: 3.465 ± 2.249
3.465IleThr: 3.465 ± 1.307
1.386IleVal: 1.386 ± 0.598
0.693IleTrp: 0.693 ± 0.675
2.772IleTyr: 2.772 ± 1.197
0.0IleXaa: 0.0 ± 0.0
Lys
1.386LysAla: 1.386 ± 1.151
1.386LysCys: 1.386 ± 0.917
4.158LysAsp: 4.158 ± 2.619
5.544LysGlu: 5.544 ± 1.745
1.386LysPhe: 1.386 ± 1.23
2.772LysGly: 2.772 ± 1.831
0.693LysHis: 0.693 ± 0.615
1.386LysIle: 1.386 ± 0.917
9.702LysLys: 9.702 ± 4.599
5.544LysLeu: 5.544 ± 1.108
3.465LysMet: 3.465 ± 1.07
2.079LysAsn: 2.079 ± 1.089
2.772LysPro: 2.772 ± 1.197
1.386LysGln: 1.386 ± 1.23
2.772LysArg: 2.772 ± 1.861
2.772LysSer: 2.772 ± 1.285
4.851LysThr: 4.851 ± 1.533
2.079LysVal: 2.079 ± 0.801
0.0LysTrp: 0.0 ± 0.0
3.465LysTyr: 3.465 ± 2.419
0.0LysXaa: 0.0 ± 0.0
Leu
3.465LeuAla: 3.465 ± 1.093
0.693LeuCys: 0.693 ± 0.462
4.851LeuAsp: 4.851 ± 2.03
4.158LeuGlu: 4.158 ± 2.478
3.465LeuPhe: 3.465 ± 1.101
4.851LeuGly: 4.851 ± 1.879
2.079LeuHis: 2.079 ± 1.122
7.623LeuIle: 7.623 ± 1.525
4.158LeuLys: 4.158 ± 3.198
2.772LeuLeu: 2.772 ± 1.323
2.079LeuMet: 2.079 ± 0.875
7.623LeuAsn: 7.623 ± 4.024
5.544LeuPro: 5.544 ± 1.431
4.158LeuGln: 4.158 ± 1.209
2.772LeuArg: 2.772 ± 1.044
5.544LeuSer: 5.544 ± 1.234
4.158LeuThr: 4.158 ± 0.952
5.544LeuVal: 5.544 ± 1.047
0.693LeuTrp: 0.693 ± 1.053
3.465LeuTyr: 3.465 ± 1.623
0.0LeuXaa: 0.0 ± 0.0
Met
1.386MetAla: 1.386 ± 0.653
0.693MetCys: 0.693 ± 0.615
0.693MetAsp: 0.693 ± 0.462
0.693MetGlu: 0.693 ± 0.615
2.079MetPhe: 2.079 ± 0.908
1.386MetGly: 1.386 ± 0.653
0.693MetHis: 0.693 ± 0.462
1.386MetIle: 1.386 ± 1.105
1.386MetLys: 1.386 ± 0.827
2.079MetLeu: 2.079 ± 1.846
0.693MetMet: 0.693 ± 0.675
2.079MetAsn: 2.079 ± 0.649
2.772MetPro: 2.772 ± 1.418
0.693MetGln: 0.693 ± 0.675
0.0MetArg: 0.0 ± 0.0
4.851MetSer: 4.851 ± 2.832
1.386MetThr: 1.386 ± 1.105
0.0MetVal: 0.0 ± 0.0
0.0MetTrp: 0.0 ± 0.0
2.772MetTyr: 2.772 ± 1.559
0.0MetXaa: 0.0 ± 0.0
Asn
6.237AsnAla: 6.237 ± 2.93
0.0AsnCys: 0.0 ± 0.0
3.465AsnAsp: 3.465 ± 1.101
4.851AsnGlu: 4.851 ± 2.586
4.158AsnPhe: 4.158 ± 1.532
3.465AsnGly: 3.465 ± 1.147
2.772AsnHis: 2.772 ± 1.044
4.158AsnIle: 4.158 ± 2.133
1.386AsnLys: 1.386 ± 0.925
6.93AsnLeu: 6.93 ± 2.054
3.465AsnMet: 3.465 ± 2.513
6.237AsnAsn: 6.237 ± 1.504
5.544AsnPro: 5.544 ± 2.02
1.386AsnGln: 1.386 ± 1.052
2.079AsnArg: 2.079 ± 1.293
6.237AsnSer: 6.237 ± 4.811
4.851AsnThr: 4.851 ± 2.362
9.009AsnVal: 9.009 ± 2.249
0.693AsnTrp: 0.693 ± 0.615
4.158AsnTyr: 4.158 ± 1.298
0.0AsnXaa: 0.0 ± 0.0
Pro
1.386ProAla: 1.386 ± 0.925
0.693ProCys: 0.693 ± 0.615
0.693ProAsp: 0.693 ± 0.462
4.851ProGlu: 4.851 ± 1.448
1.386ProPhe: 1.386 ± 0.925
3.465ProGly: 3.465 ± 1.426
0.693ProHis: 0.693 ± 0.615
2.772ProIle: 2.772 ± 1.265
2.772ProLys: 2.772 ± 0.9
1.386ProLeu: 1.386 ± 1.105
2.772ProMet: 2.772 ± 0.765
2.079ProAsn: 2.079 ± 0.649
0.0ProPro: 0.0 ± 0.0
2.079ProGln: 2.079 ± 1.387
0.693ProArg: 0.693 ± 1.047
6.93ProSer: 6.93 ± 2.27
3.465ProThr: 3.465 ± 1.426
2.772ProVal: 2.772 ± 0.765
0.0ProTrp: 0.0 ± 0.0
0.693ProTyr: 0.693 ± 0.615
0.0ProXaa: 0.0 ± 0.0
Gln
0.693GlnAla: 0.693 ± 0.675
0.0GlnCys: 0.0 ± 0.0
2.079GlnAsp: 2.079 ± 0.649
1.386GlnGlu: 1.386 ± 0.653
2.079GlnPhe: 2.079 ± 0.871
3.465GlnGly: 3.465 ± 1.085
0.0GlnHis: 0.0 ± 0.0
4.158GlnIle: 4.158 ± 1.762
1.386GlnLys: 1.386 ± 0.653
3.465GlnLeu: 3.465 ± 1.69
1.386GlnMet: 1.386 ± 0.827
3.465GlnAsn: 3.465 ± 1.388
0.693GlnPro: 0.693 ± 0.462
0.693GlnGln: 0.693 ± 0.462
2.772GlnArg: 2.772 ± 1.285
4.158GlnSer: 4.158 ± 0.952
0.693GlnThr: 0.693 ± 0.615
1.386GlnVal: 1.386 ± 0.925
0.693GlnTrp: 0.693 ± 0.615
0.0GlnTyr: 0.0 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
1.386ArgAla: 1.386 ± 0.925
0.693ArgCys: 0.693 ± 0.615
4.851ArgAsp: 4.851 ± 1.566
2.079ArgGlu: 2.079 ± 0.924
1.386ArgPhe: 1.386 ± 0.598
2.079ArgGly: 2.079 ± 1.237
0.0ArgHis: 0.0 ± 0.0
2.079ArgIle: 2.079 ± 1.116
2.079ArgLys: 2.079 ± 1.846
4.851ArgLeu: 4.851 ± 2.057
1.386ArgMet: 1.386 ± 0.925
2.772ArgAsn: 2.772 ± 1.197
1.386ArgPro: 1.386 ± 0.598
1.386ArgGln: 1.386 ± 0.598
1.386ArgArg: 1.386 ± 0.932
2.079ArgSer: 2.079 ± 0.908
1.386ArgThr: 1.386 ± 0.932
0.0ArgVal: 0.0 ± 0.0
0.0ArgTrp: 0.0 ± 0.0
3.465ArgTyr: 3.465 ± 1.692
0.0ArgXaa: 0.0 ± 0.0
Ser
5.544SerAla: 5.544 ± 2.317
0.693SerCys: 0.693 ± 0.615
2.079SerAsp: 2.079 ± 2.463
4.851SerGlu: 4.851 ± 2.257
4.158SerPhe: 4.158 ± 1.416
4.851SerGly: 4.851 ± 2.617
0.693SerHis: 0.693 ± 0.675
6.93SerIle: 6.93 ± 2.824
4.851SerLys: 4.851 ± 1.435
9.009SerLeu: 9.009 ± 3.468
2.772SerMet: 2.772 ± 1.44
7.623SerAsn: 7.623 ± 3.766
4.851SerPro: 4.851 ± 2.004
4.158SerGln: 4.158 ± 2.398
3.465SerArg: 3.465 ± 1.051
6.93SerSer: 6.93 ± 3.263
4.851SerThr: 4.851 ± 2.567
4.158SerVal: 4.158 ± 1.958
0.693SerTrp: 0.693 ± 0.462
3.465SerTyr: 3.465 ± 1.101
0.0SerXaa: 0.0 ± 0.0
Thr
0.693ThrAla: 0.693 ± 1.047
2.079ThrCys: 2.079 ± 1.294
1.386ThrAsp: 1.386 ± 0.925
2.772ThrGlu: 2.772 ± 1.544
4.158ThrPhe: 4.158 ± 1.309
5.544ThrGly: 5.544 ± 3.038
1.386ThrHis: 1.386 ± 0.598
1.386ThrIle: 1.386 ± 1.39
5.544ThrLys: 5.544 ± 1.133
4.158ThrLeu: 4.158 ± 1.532
0.0ThrMet: 0.0 ± 0.0
4.158ThrAsn: 4.158 ± 2.504
1.386ThrPro: 1.386 ± 0.653
1.386ThrGln: 1.386 ± 0.884
1.386ThrArg: 1.386 ± 0.598
9.009ThrSer: 9.009 ± 1.998
0.0ThrThr: 0.0 ± 0.0
3.465ThrVal: 3.465 ± 1.703
0.693ThrTrp: 0.693 ± 0.462
4.158ThrTyr: 4.158 ± 1.79
0.0ThrXaa: 0.0 ± 0.0
Val
2.079ValAla: 2.079 ± 1.379
0.693ValCys: 0.693 ± 1.053
4.158ValAsp: 4.158 ± 1.137
2.079ValGlu: 2.079 ± 1.928
2.079ValPhe: 2.079 ± 1.033
6.237ValGly: 6.237 ± 2.653
2.079ValHis: 2.079 ± 1.033
3.465ValIle: 3.465 ± 1.119
3.465ValLys: 3.465 ± 1.623
4.158ValLeu: 4.158 ± 1.482
0.0ValMet: 0.0 ± 0.0
8.316ValAsn: 8.316 ± 1.92
5.544ValPro: 5.544 ± 2.581
1.386ValGln: 1.386 ± 1.349
3.465ValArg: 3.465 ± 1.695
2.079ValSer: 2.079 ± 0.908
3.465ValThr: 3.465 ± 1.056
2.772ValVal: 2.772 ± 1.413
0.0ValTrp: 0.0 ± 0.0
2.079ValTyr: 2.079 ± 1.584
0.0ValXaa: 0.0 ± 0.0
Trp
1.386TrpAla: 1.386 ± 0.598
0.0TrpCys: 0.0 ± 0.0
0.0TrpAsp: 0.0 ± 0.0
0.0TrpGlu: 0.0 ± 0.0
0.693TrpPhe: 0.693 ± 0.675
0.0TrpGly: 0.0 ± 0.0
0.0TrpHis: 0.0 ± 0.0
1.386TrpIle: 1.386 ± 0.925
0.693TrpLys: 0.693 ± 0.615
0.0TrpLeu: 0.0 ± 0.0
0.0TrpMet: 0.0 ± 0.0
0.693TrpAsn: 0.693 ± 0.615
1.386TrpPro: 1.386 ± 0.653
0.693TrpGln: 0.693 ± 0.675
0.693TrpArg: 0.693 ± 0.462
1.386TrpSer: 1.386 ± 0.925
0.0TrpThr: 0.0 ± 0.0
0.693TrpVal: 0.693 ± 0.462
0.0TrpTrp: 0.0 ± 0.0
1.386TrpTyr: 1.386 ± 1.066
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.772TyrAla: 2.772 ± 0.85
0.0TyrCys: 0.0 ± 0.0
4.851TyrAsp: 4.851 ± 2.088
4.851TyrGlu: 4.851 ± 2.057
3.465TyrPhe: 3.465 ± 1.066
4.158TyrGly: 4.158 ± 1.532
2.079TyrHis: 2.079 ± 1.672
2.079TyrIle: 2.079 ± 1.122
3.465TyrLys: 3.465 ± 1.623
2.772TyrLeu: 2.772 ± 1.544
1.386TyrMet: 1.386 ± 0.653
4.851TyrAsn: 4.851 ± 1.983
0.0TyrPro: 0.0 ± 0.0
0.693TyrGln: 0.693 ± 0.462
2.079TyrArg: 2.079 ± 1.033
6.93TyrSer: 6.93 ± 1.925
1.386TyrThr: 1.386 ± 0.917
3.465TyrVal: 3.465 ± 1.051
0.0TyrTrp: 0.0 ± 0.0
2.079TyrTyr: 2.079 ± 2.063
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 6 proteins (1444 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski