Parascardovia denticolens DSM 10105 = JCM 12538

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Bifidobacteriales; Bifidobacteriaceae; Parascardovia; Parascardovia denticolens

Average proteome isoelectric point is 6.58

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1679 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|E6JYX4|E6JYX4_PARDN DNA-binding helix-turn-helix protein OS=Parascardovia denticolens DSM 10105 = JCM 12538 OX=864564 GN=HMPREF0620_0914 PE=4 SV=1
MM1 pKa = 7.14AQDD4 pKa = 3.36YY5 pKa = 7.88DD6 pKa = 3.71APRR9 pKa = 11.84SKK11 pKa = 11.31DD12 pKa = 3.24EE13 pKa = 4.78DD14 pKa = 4.03EE15 pKa = 4.88EE16 pKa = 4.51SLEE19 pKa = 4.07ALSNSARR26 pKa = 11.84QEE28 pKa = 3.75QAADD32 pKa = 3.83LDD34 pKa = 4.21DD35 pKa = 5.36DD36 pKa = 4.51EE37 pKa = 5.31NAIAEE42 pKa = 4.35DD43 pKa = 4.23YY44 pKa = 9.11EE45 pKa = 5.05LPGADD50 pKa = 4.92LSNEE54 pKa = 4.01DD55 pKa = 3.61SSVTVIPQQGDD66 pKa = 3.42EE67 pKa = 4.67FVCSEE72 pKa = 4.41CFLVYY77 pKa = 10.37NRR79 pKa = 11.84RR80 pKa = 11.84LLDD83 pKa = 3.58HH84 pKa = 6.75YY85 pKa = 11.38EE86 pKa = 3.99NGKK89 pKa = 8.41PVCKK93 pKa = 10.46DD94 pKa = 3.18CAAA97 pKa = 4.2

Molecular weight: 10.79 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|E6JYG2|E6JYG2_PARDN R3H domain protein OS=Parascardovia denticolens DSM 10105 = JCM 12538 OX=864564 GN=HMPREF0620_0026 PE=4 SV=1
MM1 pKa = 7.44KK2 pKa = 9.6RR3 pKa = 11.84TFQPNNRR10 pKa = 11.84RR11 pKa = 11.84RR12 pKa = 11.84HH13 pKa = 4.82MKK15 pKa = 9.62HH16 pKa = 6.11GFRR19 pKa = 11.84QRR21 pKa = 11.84MRR23 pKa = 11.84TRR25 pKa = 11.84EE26 pKa = 3.61GRR28 pKa = 11.84ALINRR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.1GRR39 pKa = 11.84KK40 pKa = 6.57TLAAA44 pKa = 4.49

Molecular weight: 5.45 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1679

0

1679

561124

39

3158

334.2

36.73

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.742 ± 0.074

0.855 ± 0.02

6.333 ± 0.06

5.62 ± 0.069

3.667 ± 0.043

7.811 ± 0.048

2.053 ± 0.026

5.499 ± 0.056

4.62 ± 0.05

9.22 ± 0.063

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.471 ± 0.024

3.209 ± 0.037

4.671 ± 0.043

4.205 ± 0.045

6.031 ± 0.059

7.185 ± 0.06

5.586 ± 0.044

7.037 ± 0.048

1.345 ± 0.028

2.84 ± 0.034
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski