Alistipes communis

Taxonomy: cellular organisms; Bacteria; FCB group;

Average proteome isoelectric point is 6.39

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2673 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4Y1WQD6|A0A4Y1WQD6_9BACT ATPase OS=Alistipes communis OX=2585118 GN=A5CBH24_00470 PE=4 SV=1
MM1 pKa = 7.46LLVALTGMGLASCSEE16 pKa = 4.27SPEE19 pKa = 4.05APEE22 pKa = 5.82DD23 pKa = 3.66PTEE26 pKa = 4.53NPDD29 pKa = 5.55DD30 pKa = 4.09EE31 pKa = 5.66DD32 pKa = 5.18KK33 pKa = 11.75GDD35 pKa = 3.62GSEE38 pKa = 5.04GEE40 pKa = 4.56GGDD43 pKa = 3.55EE44 pKa = 4.3NKK46 pKa = 9.67TVEE49 pKa = 4.23LNYY52 pKa = 10.01TVAEE56 pKa = 3.91AAYY59 pKa = 9.14WGDD62 pKa = 4.69DD63 pKa = 3.46YY64 pKa = 11.76MEE66 pKa = 6.13DD67 pKa = 3.55GTSNLIVYY75 pKa = 10.01LYY77 pKa = 10.1DD78 pKa = 3.45SPRR81 pKa = 11.84DD82 pKa = 3.33EE83 pKa = 5.86DD84 pKa = 4.3GVHH87 pKa = 6.63TGPKK91 pKa = 9.73DD92 pKa = 3.31HH93 pKa = 7.26FNIDD97 pKa = 3.22MNLPNFNGGEE107 pKa = 4.04LLIPARR113 pKa = 11.84SYY115 pKa = 10.94PIGEE119 pKa = 4.34PEE121 pKa = 4.28VYY123 pKa = 10.41APNTLEE129 pKa = 4.6PGFADD134 pKa = 3.48EE135 pKa = 5.09FEE137 pKa = 4.74IGGVLYY143 pKa = 10.84GDD145 pKa = 4.23YY146 pKa = 10.98YY147 pKa = 11.61GVFHH151 pKa = 6.04QVIDD155 pKa = 3.73AEE157 pKa = 4.31QNEE160 pKa = 4.73TYY162 pKa = 11.19EE163 pKa = 4.25MVSEE167 pKa = 4.58GEE169 pKa = 4.03MTVGYY174 pKa = 10.2EE175 pKa = 3.86NGVYY179 pKa = 10.19TIDD182 pKa = 3.3ATFTTEE188 pKa = 3.62EE189 pKa = 4.34GVVYY193 pKa = 10.38HH194 pKa = 5.5VTYY197 pKa = 10.51KK198 pKa = 11.01GAITVDD204 pKa = 4.08DD205 pKa = 4.57EE206 pKa = 5.17SLGEE210 pKa = 4.4PDD212 pKa = 5.32DD213 pKa = 4.39EE214 pKa = 4.68DD215 pKa = 3.77WYY217 pKa = 10.88STLTDD222 pKa = 3.9DD223 pKa = 5.38VEE225 pKa = 4.64VDD227 pKa = 4.17ALTQGQLYY235 pKa = 10.63YY236 pKa = 10.24MGADD240 pKa = 3.65DD241 pKa = 5.04KK242 pKa = 11.8SSLFGILLGTEE253 pKa = 4.53GVTLSNGTGTGEE265 pKa = 3.83LMQFFVNADD274 pKa = 3.31PDD276 pKa = 3.92AVKK279 pKa = 10.22EE280 pKa = 4.12LPAGKK285 pKa = 10.36YY286 pKa = 9.91EE287 pKa = 4.01IVPRR291 pKa = 11.84SAPMEE296 pKa = 4.45PEE298 pKa = 4.18TVIEE302 pKa = 5.0GYY304 pKa = 10.37KK305 pKa = 10.34EE306 pKa = 4.16GNQLGGSWYY315 pKa = 10.67FEE317 pKa = 4.18LEE319 pKa = 3.92KK320 pKa = 11.15NLTVNRR326 pKa = 11.84APAYY330 pKa = 9.23EE331 pKa = 4.07GTVTIGHH338 pKa = 5.96TEE340 pKa = 3.71NTLDD344 pKa = 3.51YY345 pKa = 10.23TVDD348 pKa = 3.89FEE350 pKa = 6.05FYY352 pKa = 10.81DD353 pKa = 4.09DD354 pKa = 5.31NLDD357 pKa = 3.12EE358 pKa = 5.16GYY360 pKa = 9.9IVSGSFSGKK369 pKa = 8.59MEE371 pKa = 4.5YY372 pKa = 9.85IYY374 pKa = 10.96DD375 pKa = 4.24AGTLQAKK382 pKa = 9.54GGRR385 pKa = 11.84VTAPRR390 pKa = 11.84RR391 pKa = 11.84PADD394 pKa = 3.24KK395 pKa = 9.48RR396 pKa = 11.84AARR399 pKa = 11.84IRR401 pKa = 11.84RR402 pKa = 3.65

Molecular weight: 44.13 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4Y1WUB2|A0A4Y1WUB2_9BACT Ribosome-recycling factor OS=Alistipes communis OX=2585118 GN=frr PE=3 SV=1
MM1 pKa = 6.74EE2 pKa = 5.23TKK4 pKa = 10.08LQHH7 pKa = 6.55PLLGEE12 pKa = 3.77IVLCQTRR19 pKa = 11.84RR20 pKa = 11.84ARR22 pKa = 11.84RR23 pKa = 11.84ISLSVRR29 pKa = 11.84STGGVRR35 pKa = 11.84LSFPCNVPRR44 pKa = 11.84ARR46 pKa = 11.84ALAFLEE52 pKa = 5.03SKK54 pKa = 9.3TDD56 pKa = 3.14WVIRR60 pKa = 11.84TRR62 pKa = 11.84DD63 pKa = 3.27RR64 pKa = 11.84LAARR68 pKa = 11.84AAAHH72 pKa = 6.58PAPAPCDD79 pKa = 3.37IEE81 pKa = 4.29ALRR84 pKa = 11.84SAAKK88 pKa = 10.49AEE90 pKa = 3.97LPTRR94 pKa = 11.84VEE96 pKa = 3.85EE97 pKa = 4.09LARR100 pKa = 11.84LHH102 pKa = 5.82GFRR105 pKa = 11.84YY106 pKa = 9.98GRR108 pKa = 11.84VTIRR112 pKa = 11.84ASRR115 pKa = 11.84TKK117 pKa = 9.64WGCCTGDD124 pKa = 3.46NNLSLSLFLMTLPPHH139 pKa = 6.55LRR141 pKa = 11.84DD142 pKa = 3.41FVLLHH147 pKa = 6.02EE148 pKa = 4.96LCHH151 pKa = 5.84TVHH154 pKa = 7.09HH155 pKa = 6.76DD156 pKa = 3.51HH157 pKa = 6.87SPHH160 pKa = 5.39FHH162 pKa = 6.92ALLDD166 pKa = 3.84RR167 pKa = 11.84LTGGNEE173 pKa = 3.69KK174 pKa = 10.54LLSRR178 pKa = 11.84EE179 pKa = 3.96LRR181 pKa = 11.84SYY183 pKa = 10.64SIPARR188 pKa = 3.79

Molecular weight: 21.21 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2673

0

2673

959588

41

2342

359.0

40.05

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.491 ± 0.064

1.311 ± 0.02

5.955 ± 0.034

6.559 ± 0.046

4.15 ± 0.025

7.54 ± 0.04

1.778 ± 0.017

5.546 ± 0.034

4.468 ± 0.045

9.038 ± 0.044

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.394 ± 0.017

3.78 ± 0.031

4.117 ± 0.029

2.984 ± 0.024

6.845 ± 0.058

5.683 ± 0.044

5.848 ± 0.042

7.068 ± 0.037

1.282 ± 0.018

4.161 ± 0.033
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski