Atopobium vaginae DSM 15829

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Actinomycetales; Actinomycetaceae; Fannyhessea; Fannyhessea vaginae

Average proteome isoelectric point is 6.43

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1243 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|F1T629|F1T629_9ACTO Phenylalanine--tRNA ligase alpha subunit OS=Atopobium vaginae DSM 15829 OX=525256 GN=pheS PE=3 SV=1
MM1 pKa = 7.09VGCIITGHH9 pKa = 6.57GDD11 pKa = 3.7FAQGLMSALEE21 pKa = 4.42MIAGPQNATQAVIFHH36 pKa = 7.03EE37 pKa = 4.96DD38 pKa = 2.9EE39 pKa = 4.18AATFGVRR46 pKa = 11.84LTHH49 pKa = 7.34AIDD52 pKa = 3.39EE53 pKa = 5.08AIEE56 pKa = 4.06QFGSVLVCCDD66 pKa = 3.79LMGGTPFNQAMLAAADD82 pKa = 3.95KK83 pKa = 10.23PVEE86 pKa = 4.15IVTGCNLGMLLEE98 pKa = 4.51LTSSQSSASSAQEE111 pKa = 3.74LAQIAQDD118 pKa = 3.43AGKK121 pKa = 10.31EE122 pKa = 4.33SVAHH126 pKa = 6.64ISPSQISAHH135 pKa = 6.18TDD137 pKa = 3.13NQDD140 pKa = 3.29TLDD143 pKa = 4.14ISDD146 pKa = 4.43EE147 pKa = 4.26GDD149 pKa = 3.69GII151 pKa = 4.32

Molecular weight: 15.63 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|F1T5S3|F1T5S3_9ACTO Sporulation initiation inhibitor protein Soj OS=Atopobium vaginae DSM 15829 OX=525256 GN=soj PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.42RR3 pKa = 11.84TYY5 pKa = 10.32QPNKK9 pKa = 7.93SKK11 pKa = 10.59RR12 pKa = 11.84VKK14 pKa = 8.79THH16 pKa = 5.08GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.37AGRR28 pKa = 11.84LVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.73GRR39 pKa = 11.84KK40 pKa = 8.85RR41 pKa = 11.84LTVSLL46 pKa = 4.23

Molecular weight: 5.38 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1243

0

1243

419650

39

3715

337.6

37.37

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.168 ± 0.079

1.799 ± 0.04

5.985 ± 0.069

5.55 ± 0.061

3.921 ± 0.049

6.428 ± 0.064

2.706 ± 0.035

6.312 ± 0.063

5.626 ± 0.084

9.377 ± 0.082

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.564 ± 0.039

3.872 ± 0.051

3.796 ± 0.039

4.126 ± 0.049

4.595 ± 0.06

6.777 ± 0.059

6.009 ± 0.061

7.214 ± 0.059

0.917 ± 0.026

3.26 ± 0.042
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski