Corynebacterium stationis

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Corynebacteriales; Corynebacteriaceae; Corynebacterium

Average proteome isoelectric point is 5.77

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2428 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A177IEE6|A0A177IEE6_9CORY Peptide deformylase OS=Corynebacterium stationis OX=1705 GN=def PE=3 SV=1
MM1 pKa = 7.23AQASEE6 pKa = 5.08DD7 pKa = 3.82YY8 pKa = 10.93SSEE11 pKa = 3.7NPARR15 pKa = 11.84RR16 pKa = 11.84KK17 pKa = 10.01KK18 pKa = 10.49SLPAIIGGAVVVLVAGYY35 pKa = 9.69FGIDD39 pKa = 3.34LTSDD43 pKa = 2.91NSEE46 pKa = 3.92NSGASDD52 pKa = 3.32NTGNSDD58 pKa = 3.57DD59 pKa = 4.17SAVAGSDD66 pKa = 2.84AGTTDD71 pKa = 4.18GEE73 pKa = 4.56TCAIASLPDD82 pKa = 3.42EE83 pKa = 4.65ASEE86 pKa = 4.19TRR88 pKa = 11.84DD89 pKa = 4.13DD90 pKa = 3.87ILAGGPYY97 pKa = 10.02DD98 pKa = 5.4YY99 pKa = 10.68PDD101 pKa = 3.23NDD103 pKa = 3.13NRR105 pKa = 11.84HH106 pKa = 5.73FGNYY110 pKa = 9.31EE111 pKa = 4.21GILPEE116 pKa = 4.06QDD118 pKa = 2.46SDD120 pKa = 3.63FYY122 pKa = 11.42RR123 pKa = 11.84EE124 pKa = 4.18YY125 pKa = 10.56TVEE128 pKa = 4.19TPGLDD133 pKa = 2.84HH134 pKa = 7.29RR135 pKa = 11.84GQRR138 pKa = 11.84RR139 pKa = 11.84IITGGGSEE147 pKa = 4.68EE148 pKa = 5.42DD149 pKa = 3.6PEE151 pKa = 3.9AWYY154 pKa = 8.41YY155 pKa = 10.59TDD157 pKa = 4.09DD158 pKa = 4.05HH159 pKa = 7.62YY160 pKa = 11.78EE161 pKa = 4.21SFCEE165 pKa = 4.71IPDD168 pKa = 3.75AEE170 pKa = 4.16

Molecular weight: 18.31 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0X8VHV0|A0A0X8VHV0_9CORY ATP synthase subunit c OS=Corynebacterium stationis OX=1705 GN=atpE PE=3 SV=1
MM1 pKa = 7.69AKK3 pKa = 10.06GKK5 pKa = 8.69RR6 pKa = 11.84TFQPNNRR13 pKa = 11.84RR14 pKa = 11.84RR15 pKa = 11.84ARR17 pKa = 11.84KK18 pKa = 8.59HH19 pKa = 4.58GFRR22 pKa = 11.84TRR24 pKa = 11.84MSTRR28 pKa = 11.84AGRR31 pKa = 11.84AIVAARR37 pKa = 11.84RR38 pKa = 11.84KK39 pKa = 9.72KK40 pKa = 10.5GRR42 pKa = 11.84AKK44 pKa = 9.67LTAA47 pKa = 4.21

Molecular weight: 5.42 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2428

0

2428

788366

40

3065

324.7

35.23

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.371 ± 0.061

0.628 ± 0.013

6.066 ± 0.049

6.656 ± 0.054

3.499 ± 0.036

8.178 ± 0.042

2.099 ± 0.024

5.591 ± 0.038

3.547 ± 0.039

9.427 ± 0.052

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.335 ± 0.024

3.167 ± 0.031

4.801 ± 0.032

3.463 ± 0.033

5.594 ± 0.047

6.108 ± 0.035

5.91 ± 0.03

7.936 ± 0.04

1.363 ± 0.019

2.262 ± 0.025
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski