Edaphobacter modestus

Taxonomy: cellular organisms; Bacteria; Acidobacteria; Acidobacteriia; Acidobacteriales; Acidobacteriaceae; Edaphobacter

Average proteome isoelectric point is 6.84

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6023 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4Q7YXZ5|A0A4Q7YXZ5_9BACT LytTR family two component transcriptional regulator OS=Edaphobacter modestus OX=388466 GN=BDD14_3899 PE=4 SV=1
MM1 pKa = 7.47ANIIEE6 pKa = 4.96GYY8 pKa = 7.76WLSVVTSDD16 pKa = 4.31FFVINFTTDD25 pKa = 3.46PFPPGTSLYY34 pKa = 11.15ANISLSEE41 pKa = 4.03INTLFSGNNPNDD53 pKa = 3.41PTFAATAFIDD63 pKa = 3.16SWTVYY68 pKa = 10.32LADD71 pKa = 3.99GTEE74 pKa = 4.01STPIQGQGFAQNAIGLDD91 pKa = 3.22NCARR95 pKa = 11.84IHH97 pKa = 6.04FVLVGDD103 pKa = 4.41RR104 pKa = 11.84VAAIAQVNIFRR115 pKa = 4.8

Molecular weight: 12.47 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4Q7YVV8|A0A4Q7YVV8_9BACT Uncharacterized protein DUF4339 OS=Edaphobacter modestus OX=388466 GN=BDD14_2812 PE=4 SV=1
MM1 pKa = 8.0PKK3 pKa = 9.02RR4 pKa = 11.84TFQPNRR10 pKa = 11.84RR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84SKK15 pKa = 8.65THH17 pKa = 5.87GFLTRR22 pKa = 11.84MKK24 pKa = 9.03TKK26 pKa = 10.72AGAAVLNRR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84AKK38 pKa = 10.03GRR40 pKa = 11.84HH41 pKa = 5.72KK42 pKa = 10.29IAVSAGFRR50 pKa = 11.84DD51 pKa = 3.66

Molecular weight: 5.92 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6023

0

6023

2031366

28

2469

337.3

36.96

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.316 ± 0.034

0.9 ± 0.009

5.054 ± 0.022

5.385 ± 0.032

3.976 ± 0.025

7.923 ± 0.027

2.269 ± 0.014

5.177 ± 0.022

3.713 ± 0.025

9.889 ± 0.04

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.248 ± 0.017

3.518 ± 0.035

5.275 ± 0.021

3.857 ± 0.022

6.421 ± 0.032

6.724 ± 0.029

6.096 ± 0.032

7.126 ± 0.023

1.397 ± 0.012

2.734 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski