Amino acid dipepetide frequency for Botrytis cinerea fusarivirus 1-S1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
4.128AlaAla: 4.128 ± 0.605
0.0AlaCys: 0.0 ± 0.0
4.128AlaAsp: 4.128 ± 0.605
2.064AlaGlu: 2.064 ± 0.303
6.192AlaPhe: 6.192 ± 3.821
4.128AlaGly: 4.128 ± 0.971
2.064AlaHis: 2.064 ± 1.879
3.096AlaIle: 3.096 ± 0.334
4.128AlaLys: 4.128 ± 0.605
9.288AlaLeu: 9.288 ± 2.149
5.16AlaMet: 5.16 ± 0.032
1.032AlaAsn: 1.032 ± 0.637
3.096AlaPro: 3.096 ± 1.242
4.128AlaGln: 4.128 ± 0.605
6.192AlaArg: 6.192 ± 4.06
7.224AlaSer: 7.224 ± 1.847
3.096AlaThr: 3.096 ± 0.334
2.064AlaVal: 2.064 ± 1.274
1.032AlaTrp: 1.032 ± 0.939
2.064AlaTyr: 2.064 ± 1.879
0.0AlaXaa: 0.0 ± 0.0
Cys
1.032CysAla: 1.032 ± 0.939
0.0CysCys: 0.0 ± 0.0
0.0CysAsp: 0.0 ± 0.0
0.0CysGlu: 0.0 ± 0.0
0.0CysPhe: 0.0 ± 0.0
0.0CysGly: 0.0 ± 0.0
0.0CysHis: 0.0 ± 0.0
0.0CysIle: 0.0 ± 0.0
0.0CysLys: 0.0 ± 0.0
1.032CysLeu: 1.032 ± 0.637
0.0CysMet: 0.0 ± 0.0
1.032CysAsn: 1.032 ± 0.939
0.0CysPro: 0.0 ± 0.0
0.0CysGln: 0.0 ± 0.0
0.0CysArg: 0.0 ± 0.0
1.032CysSer: 1.032 ± 0.637
0.0CysThr: 0.0 ± 0.0
0.0CysVal: 0.0 ± 0.0
0.0CysTrp: 0.0 ± 0.0
1.032CysTyr: 1.032 ± 0.939
0.0CysXaa: 0.0 ± 0.0
Asp
2.064AspAla: 2.064 ± 1.879
1.032AspCys: 1.032 ± 0.637
4.128AspAsp: 4.128 ± 2.181
1.032AspGlu: 1.032 ± 0.939
3.096AspPhe: 3.096 ± 1.91
3.096AspGly: 3.096 ± 1.242
3.096AspHis: 3.096 ± 1.242
2.064AspIle: 2.064 ± 1.274
1.032AspLys: 1.032 ± 0.637
4.128AspLeu: 4.128 ± 2.547
0.0AspMet: 0.0 ± 0.0
1.032AspAsn: 1.032 ± 0.939
1.032AspPro: 1.032 ± 0.939
2.064AspGln: 2.064 ± 0.303
2.064AspArg: 2.064 ± 0.303
3.096AspSer: 3.096 ± 1.91
1.032AspThr: 1.032 ± 0.939
3.096AspVal: 3.096 ± 1.91
1.032AspTrp: 1.032 ± 0.637
3.096AspTyr: 3.096 ± 0.334
0.0AspXaa: 0.0 ± 0.0
Glu
4.128GluAla: 4.128 ± 2.181
0.0GluCys: 0.0 ± 0.0
3.096GluAsp: 3.096 ± 0.334
4.128GluGlu: 4.128 ± 0.605
2.064GluPhe: 2.064 ± 0.303
0.0GluGly: 0.0 ± 0.0
1.032GluHis: 1.032 ± 0.939
1.032GluIle: 1.032 ± 0.637
4.128GluLys: 4.128 ± 0.605
5.16GluLeu: 5.16 ± 1.544
0.0GluMet: 0.0 ± 0.0
1.032GluAsn: 1.032 ± 0.637
0.0GluPro: 0.0 ± 0.0
0.0GluGln: 0.0 ± 0.0
1.032GluArg: 1.032 ± 0.637
6.192GluSer: 6.192 ± 2.484
3.096GluThr: 3.096 ± 0.334
6.192GluVal: 6.192 ± 0.908
0.0GluTrp: 0.0 ± 0.0
1.032GluTyr: 1.032 ± 0.637
0.0GluXaa: 0.0 ± 0.0
Phe
4.128PheAla: 4.128 ± 2.547
0.0PheCys: 0.0 ± 0.0
2.064PheAsp: 2.064 ± 1.274
3.096PheGlu: 3.096 ± 1.242
2.064PhePhe: 2.064 ± 1.274
2.064PheGly: 2.064 ± 0.303
1.032PheHis: 1.032 ± 0.637
7.224PheIle: 7.224 ± 2.881
5.16PheLys: 5.16 ± 3.184
9.288PheLeu: 9.288 ± 3.725
1.032PheMet: 1.032 ± 0.637
2.064PheAsn: 2.064 ± 0.303
3.096PhePro: 3.096 ± 1.242
0.0PheGln: 0.0 ± 0.0
3.096PheArg: 3.096 ± 1.91
3.096PheSer: 3.096 ± 1.91
2.064PheThr: 2.064 ± 1.274
2.064PheVal: 2.064 ± 0.303
2.064PheTrp: 2.064 ± 0.303
2.064PheTyr: 2.064 ± 0.303
0.0PheXaa: 0.0 ± 0.0
Gly
3.096GlyAla: 3.096 ± 1.91
0.0GlyCys: 0.0 ± 0.0
3.096GlyAsp: 3.096 ± 1.242
0.0GlyGlu: 0.0 ± 0.0
3.096GlyPhe: 3.096 ± 0.334
6.192GlyGly: 6.192 ± 0.668
2.064GlyHis: 2.064 ± 0.303
1.032GlyIle: 1.032 ± 0.939
6.192GlyLys: 6.192 ± 2.484
4.128GlyLeu: 4.128 ± 0.971
0.0GlyMet: 0.0 ± 0.0
2.064GlyAsn: 2.064 ± 1.274
2.064GlyPro: 2.064 ± 1.274
2.064GlyGln: 2.064 ± 1.274
1.032GlyArg: 1.032 ± 0.637
4.128GlySer: 4.128 ± 0.605
8.256GlyThr: 8.256 ± 1.21
4.128GlyVal: 4.128 ± 0.605
1.032GlyTrp: 1.032 ± 0.939
1.032GlyTyr: 1.032 ± 0.637
0.0GlyXaa: 0.0 ± 0.0
His
1.032HisAla: 1.032 ± 0.939
0.0HisCys: 0.0 ± 0.0
1.032HisAsp: 1.032 ± 0.939
1.032HisGlu: 1.032 ± 0.637
1.032HisPhe: 1.032 ± 0.637
1.032HisGly: 1.032 ± 0.637
0.0HisHis: 0.0 ± 0.0
1.032HisIle: 1.032 ± 0.939
1.032HisLys: 1.032 ± 0.637
6.192HisLeu: 6.192 ± 0.908
0.0HisMet: 0.0 ± 0.0
1.032HisAsn: 1.032 ± 0.939
0.0HisPro: 0.0 ± 0.0
0.0HisGln: 0.0 ± 0.0
3.096HisArg: 3.096 ± 0.334
1.032HisSer: 1.032 ± 0.637
0.0HisThr: 0.0 ± 0.0
3.096HisVal: 3.096 ± 0.334
1.032HisTrp: 1.032 ± 0.939
2.064HisTyr: 2.064 ± 1.274
0.0HisXaa: 0.0 ± 0.0
Ile
3.096IleAla: 3.096 ± 0.334
1.032IleCys: 1.032 ± 0.637
3.096IleAsp: 3.096 ± 0.334
2.064IleGlu: 2.064 ± 0.303
4.128IlePhe: 4.128 ± 2.547
4.128IleGly: 4.128 ± 2.547
1.032IleHis: 1.032 ± 0.637
4.128IleIle: 4.128 ± 2.547
2.064IleLys: 2.064 ± 1.274
4.128IleLeu: 4.128 ± 2.181
2.064IleMet: 2.064 ± 0.303
1.032IleAsn: 1.032 ± 0.637
2.064IlePro: 2.064 ± 1.879
4.128IleGln: 4.128 ± 0.605
3.096IleArg: 3.096 ± 1.91
6.192IleSer: 6.192 ± 0.668
1.032IleThr: 1.032 ± 0.939
4.128IleVal: 4.128 ± 2.547
0.0IleTrp: 0.0 ± 0.0
3.096IleTyr: 3.096 ± 1.91
0.0IleXaa: 0.0 ± 0.0
Lys
2.064LysAla: 2.064 ± 1.274
0.0LysCys: 0.0 ± 0.0
5.16LysAsp: 5.16 ± 1.608
2.064LysGlu: 2.064 ± 1.879
4.128LysPhe: 4.128 ± 0.971
2.064LysGly: 2.064 ± 0.303
3.096LysHis: 3.096 ± 1.91
4.128LysIle: 4.128 ± 0.971
4.128LysLys: 4.128 ± 2.547
5.16LysLeu: 5.16 ± 3.12
5.16LysMet: 5.16 ± 0.032
1.032LysAsn: 1.032 ± 0.939
2.064LysPro: 2.064 ± 0.303
1.032LysGln: 1.032 ± 0.637
2.064LysArg: 2.064 ± 0.303
6.192LysSer: 6.192 ± 0.668
0.0LysThr: 0.0 ± 0.0
5.16LysVal: 5.16 ± 1.544
4.128LysTrp: 4.128 ± 2.547
3.096LysTyr: 3.096 ± 1.242
0.0LysXaa: 0.0 ± 0.0
Leu
10.32LeuAla: 10.32 ± 3.089
1.032LeuCys: 1.032 ± 0.939
2.064LeuAsp: 2.064 ± 1.274
7.224LeuGlu: 7.224 ± 1.847
6.192LeuPhe: 6.192 ± 4.06
7.224LeuGly: 7.224 ± 1.847
3.096LeuHis: 3.096 ± 0.334
6.192LeuIle: 6.192 ± 2.244
4.128LeuLys: 4.128 ± 2.181
9.288LeuLeu: 9.288 ± 2.149
4.128LeuMet: 4.128 ± 0.971
4.128LeuAsn: 4.128 ± 0.605
11.352LeuPro: 11.352 ± 2.276
2.064LeuGln: 2.064 ± 1.274
11.352LeuArg: 11.352 ± 0.7
8.256LeuSer: 8.256 ± 0.366
7.224LeuThr: 7.224 ± 1.847
4.128LeuVal: 4.128 ± 0.971
2.064LeuTrp: 2.064 ± 0.303
2.064LeuTyr: 2.064 ± 1.879
0.0LeuXaa: 0.0 ± 0.0
Met
3.096MetAla: 3.096 ± 0.334
0.0MetCys: 0.0 ± 0.0
2.064MetAsp: 2.064 ± 0.303
1.032MetGlu: 1.032 ± 0.637
2.064MetPhe: 2.064 ± 1.274
2.064MetGly: 2.064 ± 1.274
1.032MetHis: 1.032 ± 0.637
0.0MetIle: 0.0 ± 0.0
2.064MetLys: 2.064 ± 0.303
3.096MetLeu: 3.096 ± 1.91
0.0MetMet: 0.0 ± 0.0
1.032MetAsn: 1.032 ± 0.637
1.032MetPro: 1.032 ± 0.637
1.032MetGln: 1.032 ± 0.939
0.0MetArg: 0.0 ± 0.0
1.032MetSer: 1.032 ± 0.637
4.128MetThr: 4.128 ± 2.181
2.064MetVal: 2.064 ± 0.303
3.096MetTrp: 3.096 ± 1.91
1.032MetTyr: 1.032 ± 0.637
0.0MetXaa: 0.0 ± 0.0
Asn
3.096AsnAla: 3.096 ± 1.242
0.0AsnCys: 0.0 ± 0.0
2.064AsnAsp: 2.064 ± 1.274
1.032AsnGlu: 1.032 ± 0.939
2.064AsnPhe: 2.064 ± 0.303
2.064AsnGly: 2.064 ± 0.303
1.032AsnHis: 1.032 ± 0.637
4.128AsnIle: 4.128 ± 0.971
1.032AsnLys: 1.032 ± 0.637
2.064AsnLeu: 2.064 ± 1.274
0.0AsnMet: 0.0 ± 0.473
1.032AsnAsn: 1.032 ± 0.939
3.096AsnPro: 3.096 ± 2.818
1.032AsnGln: 1.032 ± 0.939
0.0AsnArg: 0.0 ± 0.0
3.096AsnSer: 3.096 ± 1.242
2.064AsnThr: 2.064 ± 1.879
3.096AsnVal: 3.096 ± 0.334
0.0AsnTrp: 0.0 ± 0.0
0.0AsnTyr: 0.0 ± 0.0
0.0AsnXaa: 0.0 ± 0.0
Pro
3.096ProAla: 3.096 ± 1.91
0.0ProCys: 0.0 ± 0.0
1.032ProAsp: 1.032 ± 0.939
3.096ProGlu: 3.096 ± 1.242
3.096ProPhe: 3.096 ± 1.242
0.0ProGly: 0.0 ± 0.0
0.0ProHis: 0.0 ± 0.0
5.16ProIle: 5.16 ± 1.608
3.096ProLys: 3.096 ± 1.242
1.032ProLeu: 1.032 ± 0.939
2.064ProMet: 2.064 ± 0.392
3.096ProAsn: 3.096 ± 2.818
2.064ProPro: 2.064 ± 1.274
1.032ProGln: 1.032 ± 0.637
5.16ProArg: 5.16 ± 0.032
6.192ProSer: 6.192 ± 2.484
3.096ProThr: 3.096 ± 1.91
6.192ProVal: 6.192 ± 2.244
3.096ProTrp: 3.096 ± 1.91
1.032ProTyr: 1.032 ± 0.637
0.0ProXaa: 0.0 ± 0.0
Gln
0.0GlnAla: 0.0 ± 0.0
0.0GlnCys: 0.0 ± 0.0
0.0GlnAsp: 0.0 ± 0.0
3.096GlnGlu: 3.096 ± 0.334
2.064GlnPhe: 2.064 ± 0.303
0.0GlnGly: 0.0 ± 0.0
0.0GlnHis: 0.0 ± 0.0
2.064GlnIle: 2.064 ± 1.274
0.0GlnLys: 0.0 ± 0.0
6.192GlnLeu: 6.192 ± 0.668
2.064GlnMet: 2.064 ± 1.274
3.096GlnAsn: 3.096 ± 0.334
0.0GlnPro: 0.0 ± 0.0
2.064GlnGln: 2.064 ± 0.303
1.032GlnArg: 1.032 ± 0.939
3.096GlnSer: 3.096 ± 1.242
1.032GlnThr: 1.032 ± 0.939
3.096GlnVal: 3.096 ± 0.334
2.064GlnTrp: 2.064 ± 0.303
2.064GlnTyr: 2.064 ± 1.274
0.0GlnXaa: 0.0 ± 0.0
Arg
4.128ArgAla: 4.128 ± 0.971
0.0ArgCys: 0.0 ± 0.0
1.032ArgAsp: 1.032 ± 0.637
3.096ArgGlu: 3.096 ± 1.242
3.096ArgPhe: 3.096 ± 1.91
3.096ArgGly: 3.096 ± 0.334
1.032ArgHis: 1.032 ± 0.939
2.064ArgIle: 2.064 ± 0.303
6.192ArgLys: 6.192 ± 0.908
3.096ArgLeu: 3.096 ± 1.91
3.096ArgMet: 3.096 ± 0.334
2.064ArgAsn: 2.064 ± 0.303
3.096ArgPro: 3.096 ± 1.91
1.032ArgGln: 1.032 ± 0.637
3.096ArgArg: 3.096 ± 1.91
6.192ArgSer: 6.192 ± 2.244
2.064ArgThr: 2.064 ± 0.303
1.032ArgVal: 1.032 ± 0.939
3.096ArgTrp: 3.096 ± 1.242
1.032ArgTyr: 1.032 ± 0.637
0.0ArgXaa: 0.0 ± 0.0
Ser
9.288SerAla: 9.288 ± 5.301
2.064SerCys: 2.064 ± 1.879
3.096SerAsp: 3.096 ± 0.334
1.032SerGlu: 1.032 ± 0.637
2.064SerPhe: 2.064 ± 0.303
3.096SerGly: 3.096 ± 0.334
4.128SerHis: 4.128 ± 0.605
5.16SerIle: 5.16 ± 1.544
4.128SerLys: 4.128 ± 0.971
12.384SerLeu: 12.384 ± 1.815
3.096SerMet: 3.096 ± 1.91
1.032SerAsn: 1.032 ± 0.637
5.16SerPro: 5.16 ± 3.184
5.16SerGln: 5.16 ± 1.608
5.16SerArg: 5.16 ± 3.184
6.192SerSer: 6.192 ± 4.06
4.128SerThr: 4.128 ± 2.181
5.16SerVal: 5.16 ± 1.544
0.0SerTrp: 0.0 ± 0.0
6.192SerTyr: 6.192 ± 0.908
0.0SerXaa: 0.0 ± 0.0
Thr
5.16ThrAla: 5.16 ± 1.544
0.0ThrCys: 0.0 ± 0.0
1.032ThrAsp: 1.032 ± 0.939
1.032ThrGlu: 1.032 ± 0.637
2.064ThrPhe: 2.064 ± 0.303
7.224ThrGly: 7.224 ± 1.847
1.032ThrHis: 1.032 ± 0.637
2.064ThrIle: 2.064 ± 0.303
6.192ThrLys: 6.192 ± 0.668
10.32ThrLeu: 10.32 ± 3.089
0.0ThrMet: 0.0 ± 0.0
3.096ThrAsn: 3.096 ± 0.334
5.16ThrPro: 5.16 ± 0.032
0.0ThrGln: 0.0 ± 0.0
0.0ThrArg: 0.0 ± 0.0
3.096ThrSer: 3.096 ± 1.242
0.0ThrThr: 0.0 ± 0.0
2.064ThrVal: 2.064 ± 1.879
0.0ThrTrp: 0.0 ± 0.0
2.064ThrTyr: 2.064 ± 0.303
0.0ThrXaa: 0.0 ± 0.0
Val
4.128ValAla: 4.128 ± 2.181
0.0ValCys: 0.0 ± 0.0
0.0ValAsp: 0.0 ± 0.0
3.096ValGlu: 3.096 ± 0.334
4.128ValPhe: 4.128 ± 0.971
2.064ValGly: 2.064 ± 0.303
0.0ValHis: 0.0 ± 0.0
2.064ValIle: 2.064 ± 1.274
5.16ValLys: 5.16 ± 1.608
8.256ValLeu: 8.256 ± 1.942
1.032ValMet: 1.032 ± 0.637
1.032ValAsn: 1.032 ± 0.637
4.128ValPro: 4.128 ± 2.181
5.16ValGln: 5.16 ± 1.544
2.064ValArg: 2.064 ± 1.274
6.192ValSer: 6.192 ± 2.484
5.16ValThr: 5.16 ± 1.608
1.032ValVal: 1.032 ± 0.637
3.096ValTrp: 3.096 ± 0.334
2.064ValTyr: 2.064 ± 0.303
0.0ValXaa: 0.0 ± 0.0
Trp
2.064TrpAla: 2.064 ± 1.274
0.0TrpCys: 0.0 ± 0.0
2.064TrpAsp: 2.064 ± 1.274
1.032TrpGlu: 1.032 ± 0.637
0.0TrpPhe: 0.0 ± 0.0
1.032TrpGly: 1.032 ± 0.637
0.0TrpHis: 0.0 ± 0.0
2.064TrpIle: 2.064 ± 0.303
1.032TrpLys: 1.032 ± 0.637
5.16TrpLeu: 5.16 ± 1.608
1.032TrpMet: 1.032 ± 0.637
1.032TrpAsn: 1.032 ± 0.939
2.064TrpPro: 2.064 ± 0.303
0.0TrpGln: 0.0 ± 0.0
1.032TrpArg: 1.032 ± 0.939
3.096TrpSer: 3.096 ± 1.91
2.064TrpThr: 2.064 ± 1.879
1.032TrpVal: 1.032 ± 0.939
1.032TrpTrp: 1.032 ± 0.637
2.064TrpTyr: 2.064 ± 0.303
0.0TrpXaa: 0.0 ± 0.0
Tyr
5.16TyrAla: 5.16 ± 0.032
0.0TyrCys: 0.0 ± 0.0
2.064TyrAsp: 2.064 ± 0.303
3.096TyrGlu: 3.096 ± 0.334
4.128TyrPhe: 4.128 ± 0.971
4.128TyrGly: 4.128 ± 0.605
0.0TyrHis: 0.0 ± 0.0
1.032TyrIle: 1.032 ± 0.637
1.032TyrLys: 1.032 ± 0.939
4.128TyrLeu: 4.128 ± 2.181
0.0TyrMet: 0.0 ± 0.0
1.032TyrAsn: 1.032 ± 0.939
2.064TyrPro: 2.064 ± 1.274
1.032TyrGln: 1.032 ± 0.637
2.064TyrArg: 2.064 ± 1.274
3.096TyrSer: 3.096 ± 1.242
2.064TyrThr: 2.064 ± 0.303
1.032TyrVal: 1.032 ± 0.637
1.032TyrTrp: 1.032 ± 0.637
0.0TyrTyr: 0.0 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 2 proteins (970 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski