Capybara microvirus Cap3_SP_393

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 6.39

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4V1FVS9|A0A4V1FVS9_9VIRU Uncharacterized protein OS=Capybara microvirus Cap3_SP_393 OX=2585443 PE=4 SV=1
MM1 pKa = 6.99STEE4 pKa = 4.16KK5 pKa = 10.33EE6 pKa = 3.97QKK8 pKa = 10.17KK9 pKa = 10.06KK10 pKa = 10.56FFRR13 pKa = 11.84SLIEE17 pKa = 3.83RR18 pKa = 11.84TKK20 pKa = 10.82TKK22 pKa = 10.54LPPKK26 pKa = 9.75AVSVVLGFNNVVTLQTDD43 pKa = 4.11CPNPEE48 pKa = 3.92PDD50 pKa = 4.47FRR52 pKa = 11.84DD53 pKa = 3.23ISLGAQAEE61 pKa = 4.55SGSFLGEE68 pKa = 3.86VNTNNGDD75 pKa = 2.85IFTAHH80 pKa = 7.41KK81 pKa = 10.27LAEE84 pKa = 4.41DD85 pKa = 3.66VLNNSDD91 pKa = 3.23NN92 pKa = 3.59

Molecular weight: 10.15 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W8G9|A0A4P8W8G9_9VIRU Major capsid protein OS=Capybara microvirus Cap3_SP_393 OX=2585443 PE=3 SV=1
MM1 pKa = 7.77LIKK4 pKa = 10.82NNSKK8 pKa = 9.24TSYY11 pKa = 9.85CSKK14 pKa = 10.23KK15 pKa = 10.5QYY17 pKa = 11.14ININDD22 pKa = 3.74SYY24 pKa = 11.53NYY26 pKa = 10.13LSSFQAYY33 pKa = 7.99VRR35 pKa = 11.84TYY37 pKa = 10.33YY38 pKa = 10.59DD39 pKa = 3.29YY40 pKa = 11.47QYY42 pKa = 10.71VQSNYY47 pKa = 9.26GVAYY51 pKa = 9.63FYY53 pKa = 10.87TLTFNDD59 pKa = 4.28LNLNTINYY67 pKa = 9.52NGISINTHH75 pKa = 3.56NHH77 pKa = 5.83KK78 pKa = 10.42LLHH81 pKa = 5.75LWIDD85 pKa = 3.51NVYY88 pKa = 10.63KK89 pKa = 10.64ILLRR93 pKa = 11.84KK94 pKa = 9.41FDD96 pKa = 3.86CKK98 pKa = 10.99SRR100 pKa = 11.84FFITSEE106 pKa = 3.93CGEE109 pKa = 4.37GKK111 pKa = 10.57GSRR114 pKa = 11.84KK115 pKa = 9.74KK116 pKa = 11.01GNNPHH121 pKa = 5.67YY122 pKa = 10.51HH123 pKa = 6.04VILYY127 pKa = 7.22VIPTIEE133 pKa = 4.22NMLPTSKK140 pKa = 10.72EE141 pKa = 3.56MLSIVRR147 pKa = 11.84YY148 pKa = 8.58CWQGTDD154 pKa = 4.47LDD156 pKa = 4.31LTLKK160 pKa = 9.84QNSYY164 pKa = 9.84IAKK167 pKa = 7.37TCKK170 pKa = 10.29NGILKK175 pKa = 10.14EE176 pKa = 4.09GKK178 pKa = 9.38NLGLIEE184 pKa = 4.31SLNALSYY191 pKa = 8.23VCKK194 pKa = 10.45YY195 pKa = 9.33VSKK198 pKa = 10.68DD199 pKa = 3.03IEE201 pKa = 4.57TKK203 pKa = 8.8EE204 pKa = 3.95HH205 pKa = 6.25YY206 pKa = 10.44DD207 pKa = 3.35IIKK210 pKa = 10.21NYY212 pKa = 10.5YY213 pKa = 8.0YY214 pKa = 11.13YY215 pKa = 11.21KK216 pKa = 10.58FYY218 pKa = 11.18NEE220 pKa = 4.7KK221 pKa = 10.57LLSCLKK227 pKa = 10.8CIDD230 pKa = 3.56NLIYY234 pKa = 10.36ILQKK238 pKa = 10.54SGLNEE243 pKa = 4.24TYY245 pKa = 10.66CNEE248 pKa = 3.88IQLDD252 pKa = 4.2NINSIDD258 pKa = 3.85EE259 pKa = 4.34FEE261 pKa = 5.44LYY263 pKa = 10.99LFDD266 pKa = 4.9FVKK269 pKa = 10.78NNHH272 pKa = 6.12GSTEE276 pKa = 4.48FILCNINKK284 pKa = 9.89LYY286 pKa = 10.79KK287 pKa = 10.28DD288 pKa = 3.16IYY290 pKa = 7.77NTYY293 pKa = 10.13RR294 pKa = 11.84LIHH297 pKa = 6.45KK298 pKa = 9.79EE299 pKa = 3.88YY300 pKa = 11.01DD301 pKa = 3.26FLDD304 pKa = 4.39YY305 pKa = 10.52IPKK308 pKa = 8.96TFYY311 pKa = 10.17PQMMGFKK318 pKa = 9.85LAKK321 pKa = 9.21QNIVEE326 pKa = 4.48TCSGTFIKK334 pKa = 9.83IDD336 pKa = 3.46NKK338 pKa = 10.43LCPISKK344 pKa = 10.26CFFNKK349 pKa = 10.32LYY351 pKa = 8.8KK352 pKa = 9.28THH354 pKa = 6.79LRR356 pKa = 11.84SCPSYY361 pKa = 11.09SRR363 pKa = 11.84YY364 pKa = 10.58NYY366 pKa = 10.68DD367 pKa = 3.93GINYY371 pKa = 9.36LCRR374 pKa = 11.84TIQNRR379 pKa = 11.84IDD381 pKa = 3.25ILAAKK386 pKa = 9.97ANLYY390 pKa = 11.09CNDD393 pKa = 3.33KK394 pKa = 10.7NICKK398 pKa = 9.99LYY400 pKa = 10.94SMYY403 pKa = 11.12KK404 pKa = 9.88LVYY407 pKa = 7.55EE408 pKa = 4.53HH409 pKa = 7.29RR410 pKa = 11.84LIPISDD416 pKa = 3.7FNKK419 pKa = 9.44PLEE422 pKa = 3.95MLKK425 pKa = 10.38DD426 pKa = 3.58YY427 pKa = 10.95KK428 pKa = 11.21NYY430 pKa = 9.89MEE432 pKa = 5.15LEE434 pKa = 4.47SIFSFRR440 pKa = 11.84RR441 pKa = 11.84TFGIEE446 pKa = 4.01LNLDD450 pKa = 3.61NYY452 pKa = 9.9EE453 pKa = 4.08KK454 pKa = 10.87AIMHH458 pKa = 5.98PQFYY462 pKa = 9.35PYY464 pKa = 10.52RR465 pKa = 11.84SIFTSISNVIEE476 pKa = 4.06KK477 pKa = 10.68SEE479 pKa = 4.24IADD482 pKa = 3.64KK483 pKa = 9.27QHH485 pKa = 6.76KK486 pKa = 9.64EE487 pKa = 3.71EE488 pKa = 4.09NFEE491 pKa = 4.27HH492 pKa = 6.62KK493 pKa = 10.58KK494 pKa = 10.05HH495 pKa = 5.69VKK497 pKa = 10.03KK498 pKa = 10.77LLNSYY503 pKa = 9.8RR504 pKa = 11.84YY505 pKa = 9.44EE506 pKa = 4.14YY507 pKa = 11.42

Molecular weight: 60.56 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

1563

92

583

390.8

44.5

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.566 ± 1.707

1.536 ± 0.718

4.798 ± 0.834

5.31 ± 1.061

5.054 ± 0.692

4.607 ± 0.549

1.536 ± 0.481

7.102 ± 0.959

7.422 ± 1.179

8.893 ± 0.77

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.791 ± 0.209

9.341 ± 0.517

3.263 ± 0.783

4.031 ± 1.181

3.263 ± 0.231

9.277 ± 0.971

6.206 ± 0.795

4.287 ± 0.836

0.512 ± 0.115

6.206 ± 1.884
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski