Amino acid dipepetide frequency for Capybara microvirus Cap3_SP_393

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
2.561AlaAla: 2.561 ± 0.885
0.64AlaCys: 0.64 ± 0.477
3.201AlaAsp: 3.201 ± 0.817
4.481AlaGlu: 4.481 ± 3.884
1.28AlaPhe: 1.28 ± 0.954
2.561AlaGly: 2.561 ± 1.718
1.28AlaHis: 1.28 ± 1.597
3.841AlaIle: 3.841 ± 1.422
4.481AlaLys: 4.481 ± 1.523
3.841AlaLeu: 3.841 ± 2.122
1.28AlaMet: 1.28 ± 0.578
3.841AlaAsn: 3.841 ± 2.122
1.921AlaPro: 1.921 ± 0.851
4.481AlaGln: 4.481 ± 3.266
2.561AlaArg: 2.561 ± 1.718
6.402AlaSer: 6.402 ± 2.891
1.921AlaThr: 1.921 ± 0.851
1.28AlaVal: 1.28 ± 1.597
0.64AlaTrp: 0.64 ± 0.477
3.201AlaTyr: 3.201 ± 1.333
0.0AlaXaa: 0.0 ± 0.0
Cys
0.64CysAla: 0.64 ± 0.477
0.0CysCys: 0.0 ± 0.0
0.0CysAsp: 0.0 ± 0.0
0.64CysGlu: 0.64 ± 0.477
0.64CysPhe: 0.64 ± 0.499
0.64CysGly: 0.64 ± 0.499
0.0CysHis: 0.0 ± 0.0
0.64CysIle: 0.64 ± 0.499
3.201CysLys: 3.201 ± 1.834
0.64CysLeu: 0.64 ± 0.499
0.0CysMet: 0.0 ± 0.0
2.561CysAsn: 2.561 ± 1.354
1.921CysPro: 1.921 ± 1.753
0.0CysGln: 0.0 ± 0.0
0.64CysArg: 0.64 ± 0.499
1.28CysSer: 1.28 ± 0.998
0.0CysThr: 0.0 ± 0.0
1.28CysVal: 1.28 ± 0.954
0.64CysTrp: 0.64 ± 0.499
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
2.561AspAla: 2.561 ± 1.252
1.921AspCys: 1.921 ± 1.487
1.28AspAsp: 1.28 ± 0.954
1.921AspGlu: 1.921 ± 0.352
5.122AspPhe: 5.122 ± 1.12
1.921AspGly: 1.921 ± 0.859
0.0AspHis: 0.0 ± 0.0
5.762AspIle: 5.762 ± 2.96
2.561AspLys: 2.561 ± 0.641
4.481AspLeu: 4.481 ± 1.079
3.201AspMet: 3.201 ± 1.693
5.122AspAsn: 5.122 ± 2.147
0.64AspPro: 0.64 ± 0.477
0.0AspGln: 0.0 ± 0.0
0.64AspArg: 0.64 ± 0.633
1.921AspSer: 1.921 ± 0.859
1.921AspThr: 1.921 ± 0.851
3.201AspVal: 3.201 ± 1.67
0.0AspTrp: 0.0 ± 0.0
3.841AspTyr: 3.841 ± 1.546
0.0AspXaa: 0.0 ± 0.0
Glu
2.561GluAla: 2.561 ± 1.718
0.64GluCys: 0.64 ± 0.499
1.921GluAsp: 1.921 ± 1.604
0.64GluGlu: 0.64 ± 0.499
2.561GluPhe: 2.561 ± 1.031
3.201GluGly: 3.201 ± 0.615
3.201GluHis: 3.201 ± 1.532
3.201GluIle: 3.201 ± 0.906
5.122GluLys: 5.122 ± 1.804
5.762GluLeu: 5.762 ± 3.489
1.28GluMet: 1.28 ± 0.998
1.28GluAsn: 1.28 ± 0.998
0.64GluPro: 0.64 ± 1.683
5.122GluGln: 5.122 ± 3.062
0.64GluArg: 0.64 ± 1.683
3.841GluSer: 3.841 ± 1.49
4.481GluThr: 4.481 ± 0.905
3.841GluVal: 3.841 ± 1.739
0.0GluTrp: 0.0 ± 0.0
3.201GluTyr: 3.201 ± 0.615
0.0GluXaa: 0.0 ± 0.0
Phe
0.64PheAla: 0.64 ± 0.477
0.0PheCys: 0.0 ± 0.0
3.841PheAsp: 3.841 ± 0.895
2.561PheGlu: 2.561 ± 1.031
3.201PhePhe: 3.201 ± 1.457
2.561PheGly: 2.561 ± 1.29
0.64PheHis: 0.64 ± 0.477
1.921PheIle: 1.921 ± 1.496
3.841PheLys: 3.841 ± 1.004
1.921PheLeu: 1.921 ± 1.664
0.0PheMet: 0.0 ± 0.0
7.042PheAsn: 7.042 ± 0.778
1.28PhePro: 1.28 ± 0.954
3.841PheGln: 3.841 ± 1.354
1.921PheArg: 1.921 ± 3.29
1.921PheSer: 1.921 ± 0.859
3.841PheThr: 3.841 ± 1.334
5.122PheVal: 5.122 ± 2.359
0.0PheTrp: 0.0 ± 0.0
4.481PheTyr: 4.481 ± 1.422
0.0PheXaa: 0.0 ± 0.0
Gly
4.481GlyAla: 4.481 ± 2.538
0.0GlyCys: 0.0 ± 0.0
2.561GlyAsp: 2.561 ± 1.832
2.561GlyGlu: 2.561 ± 1.409
5.122GlyPhe: 5.122 ± 1.598
3.201GlyGly: 3.201 ± 3.164
0.64GlyHis: 0.64 ± 0.477
6.402GlyIle: 6.402 ± 1.812
3.201GlyLys: 3.201 ± 1.333
2.561GlyLeu: 2.561 ± 0.641
1.28GlyMet: 1.28 ± 0.578
3.201GlyAsn: 3.201 ± 0.967
0.0GlyPro: 0.0 ± 0.0
0.64GlyGln: 0.64 ± 0.477
0.64GlyArg: 0.64 ± 0.477
3.841GlySer: 3.841 ± 1.527
3.201GlyThr: 3.201 ± 0.615
1.28GlyVal: 1.28 ± 0.515
0.0GlyTrp: 0.0 ± 0.0
1.28GlyTyr: 1.28 ± 0.954
0.0GlyXaa: 0.0 ± 0.0
His
0.0HisAla: 0.0 ± 0.0
0.0HisCys: 0.0 ± 0.0
0.0HisAsp: 0.0 ± 0.0
0.64HisGlu: 0.64 ± 0.477
0.64HisPhe: 0.64 ± 0.477
0.64HisGly: 0.64 ± 0.499
0.0HisHis: 0.0 ± 0.0
0.64HisIle: 0.64 ± 0.477
3.201HisLys: 3.201 ± 2.303
1.921HisLeu: 1.921 ± 0.895
0.0HisMet: 0.0 ± 0.0
1.921HisAsn: 1.921 ± 0.352
0.64HisPro: 0.64 ± 0.499
0.64HisGln: 0.64 ± 0.477
0.64HisArg: 0.64 ± 0.499
0.64HisSer: 0.64 ± 0.633
0.0HisThr: 0.0 ± 0.0
1.921HisVal: 1.921 ± 0.895
0.0HisTrp: 0.0 ± 0.0
1.28HisTyr: 1.28 ± 0.998
0.0HisXaa: 0.0 ± 0.0
Ile
5.122IleAla: 5.122 ± 1.735
0.64IleCys: 0.64 ± 0.499
5.122IleAsp: 5.122 ± 1.895
5.122IleGlu: 5.122 ± 2.147
4.481IlePhe: 4.481 ± 1.126
3.201IleGly: 3.201 ± 1.659
0.64IleHis: 0.64 ± 0.499
3.201IleIle: 3.201 ± 0.817
2.561IleLys: 2.561 ± 1.354
8.323IleLeu: 8.323 ± 1.773
1.28IleMet: 1.28 ± 0.515
6.402IleAsn: 6.402 ± 3.251
4.481IlePro: 4.481 ± 0.905
2.561IleGln: 2.561 ± 1.031
1.921IleArg: 1.921 ± 1.431
5.762IleSer: 5.762 ± 1.334
5.762IleThr: 5.762 ± 1.827
2.561IleVal: 2.561 ± 0.641
0.0IleTrp: 0.0 ± 0.0
1.921IleTyr: 1.921 ± 0.895
0.0IleXaa: 0.0 ± 0.0
Lys
5.122LysAla: 5.122 ± 1.003
1.28LysCys: 1.28 ± 0.998
4.481LysAsp: 4.481 ± 1.83
5.762LysGlu: 5.762 ± 2.604
3.841LysPhe: 3.841 ± 1.527
3.201LysGly: 3.201 ± 0.615
0.64LysHis: 0.64 ± 0.499
3.841LysIle: 3.841 ± 0.895
5.762LysLys: 5.762 ± 3.057
13.444LysLeu: 13.444 ± 2.379
0.0LysMet: 0.0 ± 0.0
7.682LysAsn: 7.682 ± 3.673
1.28LysPro: 1.28 ± 0.515
3.201LysGln: 3.201 ± 1.84
0.64LysArg: 0.64 ± 0.633
5.762LysSer: 5.762 ± 1.055
5.762LysThr: 5.762 ± 1.334
0.0LysVal: 0.0 ± 0.0
1.28LysTrp: 1.28 ± 0.578
1.28LysTyr: 1.28 ± 0.633
0.0LysXaa: 0.0 ± 0.0
Leu
5.762LeuAla: 5.762 ± 1.962
2.561LeuCys: 2.561 ± 1.354
4.481LeuAsp: 4.481 ± 2.145
4.481LeuGlu: 4.481 ± 2.918
1.921LeuPhe: 1.921 ± 0.859
4.481LeuGly: 4.481 ± 4.807
1.28LeuHis: 1.28 ± 0.515
6.402LeuIle: 6.402 ± 1.65
9.603LeuLys: 9.603 ± 1.854
7.042LeuLeu: 7.042 ± 1.459
1.921LeuMet: 1.921 ± 1.431
10.243LeuAsn: 10.243 ± 3.37
1.921LeuPro: 1.921 ± 1.487
3.841LeuGln: 3.841 ± 1.391
3.201LeuArg: 3.201 ± 1.333
7.682LeuSer: 7.682 ± 1.789
3.201LeuThr: 3.201 ± 0.906
2.561LeuVal: 2.561 ± 0.885
1.28LeuTrp: 1.28 ± 0.633
5.122LeuTyr: 5.122 ± 2.709
0.0LeuXaa: 0.0 ± 0.0
Met
0.64MetAla: 0.64 ± 0.477
0.0MetCys: 0.0 ± 0.0
0.64MetAsp: 0.64 ± 0.477
1.28MetGlu: 1.28 ± 0.515
0.64MetPhe: 0.64 ± 0.477
0.64MetGly: 0.64 ± 0.499
0.64MetHis: 0.64 ± 0.499
0.0MetIle: 0.0 ± 0.0
0.64MetLys: 0.64 ± 0.477
4.481MetLeu: 4.481 ± 1.422
0.64MetMet: 0.64 ± 0.499
0.0MetAsn: 0.0 ± 0.0
0.64MetPro: 0.64 ± 0.477
0.64MetGln: 0.64 ± 0.633
0.64MetArg: 0.64 ± 0.477
3.201MetSer: 3.201 ± 1.67
0.64MetThr: 0.64 ± 0.477
0.0MetVal: 0.0 ± 0.0
0.0MetTrp: 0.0 ± 0.0
1.921MetTyr: 1.921 ± 1.163
0.0MetXaa: 0.0 ± 0.0
Asn
5.762AsnAla: 5.762 ± 3.184
0.0AsnCys: 0.0 ± 0.0
3.841AsnAsp: 3.841 ± 1.546
5.762AsnGlu: 5.762 ± 1.055
3.841AsnPhe: 3.841 ± 1.422
5.762AsnGly: 5.762 ± 1.041
1.28AsnHis: 1.28 ± 0.998
4.481AsnIle: 4.481 ± 2.31
5.762AsnLys: 5.762 ± 1.436
7.682AsnLeu: 7.682 ± 3.253
1.921AsnMet: 1.921 ± 1.057
8.963AsnAsn: 8.963 ± 3.957
3.201AsnPro: 3.201 ± 1.6
3.201AsnGln: 3.201 ± 2.385
2.561AsnArg: 2.561 ± 0.885
9.603AsnSer: 9.603 ± 1.228
7.682AsnThr: 7.682 ± 1.306
4.481AsnVal: 4.481 ± 1.829
0.0AsnTrp: 0.0 ± 0.0
7.042AsnTyr: 7.042 ± 3.593
0.0AsnXaa: 0.0 ± 0.0
Pro
1.28ProAla: 1.28 ± 0.954
0.0ProCys: 0.0 ± 0.0
0.64ProAsp: 0.64 ± 1.683
1.28ProGlu: 1.28 ± 1.597
0.64ProPhe: 0.64 ± 0.477
0.0ProGly: 0.0 ± 0.0
0.64ProHis: 0.64 ± 0.499
4.481ProIle: 4.481 ± 1.295
1.921ProLys: 1.921 ± 1.664
3.201ProLeu: 3.201 ± 0.817
0.0ProMet: 0.0 ± 0.0
5.762ProAsn: 5.762 ± 2.947
0.64ProPro: 0.64 ± 1.683
1.28ProGln: 1.28 ± 0.998
0.0ProArg: 0.0 ± 0.0
3.201ProSer: 3.201 ± 0.817
3.201ProThr: 3.201 ± 0.615
1.28ProVal: 1.28 ± 0.954
0.0ProTrp: 0.0 ± 0.0
3.201ProTyr: 3.201 ± 1.745
0.0ProXaa: 0.0 ± 0.0
Gln
3.841GlnAla: 3.841 ± 2.788
0.0GlnCys: 0.0 ± 0.0
0.0GlnAsp: 0.0 ± 0.0
1.921GlnGlu: 1.921 ± 1.898
1.921GlnPhe: 1.921 ± 1.163
1.921GlnGly: 1.921 ± 0.859
0.64GlnHis: 0.64 ± 0.499
1.28GlnIle: 1.28 ± 0.954
1.921GlnLys: 1.921 ± 1.664
2.561GlnLeu: 2.561 ± 0.55
0.64GlnMet: 0.64 ± 0.499
3.841GlnAsn: 3.841 ± 0.976
1.921GlnPro: 1.921 ± 0.851
2.561GlnGln: 2.561 ± 1.718
4.481GlnArg: 4.481 ± 2.221
6.402GlnSer: 6.402 ± 3.05
2.561GlnThr: 2.561 ± 1.843
0.64GlnVal: 0.64 ± 0.633
0.0GlnTrp: 0.0 ± 0.0
1.28GlnTyr: 1.28 ± 0.998
0.0GlnXaa: 0.0 ± 0.0
Arg
1.28ArgAla: 1.28 ± 0.578
0.64ArgCys: 0.64 ± 0.477
1.28ArgAsp: 1.28 ± 1.597
1.28ArgGlu: 1.28 ± 1.265
3.841ArgPhe: 3.841 ± 1.422
0.0ArgGly: 0.0 ± 0.0
0.0ArgHis: 0.0 ± 0.0
0.64ArgIle: 0.64 ± 0.499
1.921ArgLys: 1.921 ± 0.948
1.28ArgLeu: 1.28 ± 0.998
0.0ArgMet: 0.0 ± 0.0
3.201ArgAsn: 3.201 ± 1.374
1.28ArgPro: 1.28 ± 0.954
1.28ArgGln: 1.28 ± 0.578
1.28ArgArg: 1.28 ± 0.515
4.481ArgSer: 4.481 ± 1.126
3.201ArgThr: 3.201 ± 1.74
1.28ArgVal: 1.28 ± 0.578
0.0ArgTrp: 0.0 ± 0.0
4.481ArgTyr: 4.481 ± 1.079
0.0ArgXaa: 0.0 ± 0.0
Ser
6.402SerAla: 6.402 ± 3.937
1.28SerCys: 1.28 ± 0.998
5.122SerAsp: 5.122 ± 2.565
2.561SerGlu: 2.561 ± 0.641
4.481SerPhe: 4.481 ± 1.177
6.402SerGly: 6.402 ± 1.152
0.64SerHis: 0.64 ± 0.477
10.243SerIle: 10.243 ± 1.879
7.042SerLys: 7.042 ± 1.553
6.402SerLeu: 6.402 ± 2.895
0.64SerMet: 0.64 ± 0.499
6.402SerAsn: 6.402 ± 1.634
3.201SerPro: 3.201 ± 1.693
2.561SerGln: 2.561 ± 2.531
3.201SerArg: 3.201 ± 1.373
8.963SerSer: 8.963 ± 3.41
4.481SerThr: 4.481 ± 1.329
4.481SerVal: 4.481 ± 1.877
1.28SerTrp: 1.28 ± 0.578
7.042SerTyr: 7.042 ± 2.885
0.0SerXaa: 0.0 ± 0.0
Thr
3.201ThrAla: 3.201 ± 2.107
1.28ThrCys: 1.28 ± 0.998
3.201ThrAsp: 3.201 ± 1.287
5.762ThrGlu: 5.762 ± 2.035
3.201ThrPhe: 3.201 ± 1.834
1.28ThrGly: 1.28 ± 0.578
1.28ThrHis: 1.28 ± 0.998
7.042ThrIle: 7.042 ± 1.795
3.201ThrLys: 3.201 ± 3.084
3.201ThrLeu: 3.201 ± 1.376
0.64ThrMet: 0.64 ± 0.477
4.481ThrAsn: 4.481 ± 2.015
3.201ThrPro: 3.201 ± 1.693
1.921ThrGln: 1.921 ± 1.898
0.64ThrArg: 0.64 ± 0.477
11.524ThrSer: 11.524 ± 2.998
2.561ThrThr: 2.561 ± 1.252
0.64ThrVal: 0.64 ± 0.477
0.0ThrTrp: 0.0 ± 0.0
3.841ThrTyr: 3.841 ± 1.546
0.0ThrXaa: 0.0 ± 0.0
Val
3.201ValAla: 3.201 ± 2.379
0.64ValCys: 0.64 ± 0.499
0.64ValAsp: 0.64 ± 0.477
1.921ValGlu: 1.921 ± 1.163
0.64ValPhe: 0.64 ± 0.633
1.921ValGly: 1.921 ± 1.431
0.64ValHis: 0.64 ± 0.477
3.201ValIle: 3.201 ± 1.093
2.561ValLys: 2.561 ± 0.641
5.122ValLeu: 5.122 ± 3.271
0.0ValMet: 0.0 ± 0.0
3.841ValAsn: 3.841 ± 1.892
2.561ValPro: 2.561 ± 1.908
1.28ValGln: 1.28 ± 0.633
3.201ValArg: 3.201 ± 1.333
3.201ValSer: 3.201 ± 1.6
3.201ValThr: 3.201 ± 2.107
1.921ValVal: 1.921 ± 3.246
0.0ValTrp: 0.0 ± 0.0
3.201ValTyr: 3.201 ± 1.333
0.0ValXaa: 0.0 ± 0.0
Trp
0.0TrpAla: 0.0 ± 0.0
0.0TrpCys: 0.0 ± 0.0
0.0TrpAsp: 0.0 ± 0.0
0.0TrpGlu: 0.0 ± 0.0
1.28TrpPhe: 1.28 ± 0.578
0.0TrpGly: 0.0 ± 0.0
0.0TrpHis: 0.0 ± 0.0
0.64TrpIle: 0.64 ± 0.499
0.0TrpLys: 0.0 ± 0.0
1.28TrpLeu: 1.28 ± 0.578
0.0TrpMet: 0.0 ± 0.0
0.64TrpAsn: 0.64 ± 0.633
0.0TrpPro: 0.0 ± 0.0
0.64TrpGln: 0.64 ± 0.499
0.0TrpArg: 0.0 ± 0.0
0.64TrpSer: 0.64 ± 0.477
0.0TrpThr: 0.0 ± 0.0
0.0TrpVal: 0.0 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
0.0TrpTyr: 0.0 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
0.64TyrAla: 0.64 ± 0.477
3.841TyrCys: 3.841 ± 1.79
5.762TyrAsp: 5.762 ± 1.575
2.561TyrGlu: 2.561 ± 1.354
1.28TyrPhe: 1.28 ± 0.515
2.561TyrGly: 2.561 ± 1.29
1.28TyrHis: 1.28 ± 0.515
3.201TyrIle: 3.201 ± 1.834
5.762TyrLys: 5.762 ± 2.379
3.841TyrLeu: 3.841 ± 0.976
2.561TyrMet: 2.561 ± 0.62
7.042TyrAsn: 7.042 ± 2.844
1.28TyrPro: 1.28 ± 0.998
0.64TyrGln: 0.64 ± 0.499
3.201TyrArg: 3.201 ± 1.373
2.561TyrSer: 2.561 ± 0.641
4.481TyrThr: 4.481 ± 1.889
5.122TyrVal: 5.122 ± 2.26
0.0TyrTrp: 0.0 ± 0.0
4.481TyrTyr: 4.481 ± 1.87
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 4 proteins (1563 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski