Sulfolobus sp. SCGC AB-777_G06

Taxonomy: cellular organisms; Archaea; TACK group; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Sulfolobus; unclassified Sulfolobus

Average proteome isoelectric point is 7.04

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1085 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2T9X4N7|A0A2T9X4N7_9CREN Uncharacterized protein OS=Sulfolobus sp. SCGC AB-777_G06 OX=1987491 GN=DDW11_04245 PE=4 SV=1
MM1 pKa = 7.34LRR3 pKa = 11.84DD4 pKa = 3.8FEE6 pKa = 5.45EE7 pKa = 4.45IEE9 pKa = 4.43CTKK12 pKa = 10.9EE13 pKa = 3.65EE14 pKa = 4.63YY15 pKa = 10.89YY16 pKa = 11.19DD17 pKa = 4.09DD18 pKa = 4.13LGKK21 pKa = 10.41FHH23 pKa = 7.08EE24 pKa = 4.63VPYY27 pKa = 10.0YY28 pKa = 11.01VPAKK32 pKa = 10.14CYY34 pKa = 8.68MKK36 pKa = 10.21EE37 pKa = 4.19YY38 pKa = 10.04EE39 pKa = 4.5WGTATILEE47 pKa = 4.84DD48 pKa = 5.38DD49 pKa = 4.92LDD51 pKa = 5.58LGDD54 pKa = 5.25SIIVYY59 pKa = 10.17

Molecular weight: 7.1 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2T9X4U4|A0A2T9X4U4_9CREN 50S ribosomal protein L18 OS=Sulfolobus sp. SCGC AB-777_G06 OX=1987491 GN=rpl18 PE=3 SV=1
MM1 pKa = 8.14PSPQLRR7 pKa = 11.84SRR9 pKa = 11.84SLRR12 pKa = 11.84RR13 pKa = 11.84VQVRR17 pKa = 11.84TPSGRR22 pKa = 11.84TVTHH26 pKa = 6.41YY27 pKa = 10.7EE28 pKa = 4.03DD29 pKa = 4.26KK30 pKa = 11.02KK31 pKa = 11.07NSQALCAICKK41 pKa = 10.03KK42 pKa = 9.84PLRR45 pKa = 11.84GVKK48 pKa = 8.36TNKK51 pKa = 7.52IHH53 pKa = 7.62KK54 pKa = 10.03YY55 pKa = 7.76STTEE59 pKa = 3.65KK60 pKa = 10.29RR61 pKa = 11.84PEE63 pKa = 4.01RR64 pKa = 11.84PFGGYY69 pKa = 9.47LCHH72 pKa = 7.56DD73 pKa = 3.88CLEE76 pKa = 4.31RR77 pKa = 11.84LIKK80 pKa = 10.49LAVRR84 pKa = 11.84GFF86 pKa = 3.48

Molecular weight: 9.94 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1085

0

1085

276833

19

1575

255.1

28.83

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.725 ± 0.081

0.64 ± 0.03

4.751 ± 0.069

7.078 ± 0.104

4.347 ± 0.065

6.596 ± 0.062

1.307 ± 0.028

8.869 ± 0.07

7.808 ± 0.118

10.276 ± 0.094

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.193 ± 0.033

4.519 ± 0.07

3.932 ± 0.06

2.259 ± 0.044

4.482 ± 0.074

6.561 ± 0.077

4.941 ± 0.066

7.973 ± 0.068

0.97 ± 0.027

4.772 ± 0.064
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski