Chryseobacterium sp. RU37D

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Weeksellaceae; Chryseobacterium group; Chryseobacterium; unclassified Chryseobacterium

Average proteome isoelectric point is 6.81

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2783 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1N6RZ44|A0A1N6RZ44_9FLAO Opacity protein OS=Chryseobacterium sp. RU37D OX=1907397 GN=SAMN05880574_110103 PE=4 SV=1
MM1 pKa = 7.7SDD3 pKa = 3.06INIKK7 pKa = 8.65ITDD10 pKa = 3.8RR11 pKa = 11.84DD12 pKa = 4.4GISHH16 pKa = 7.21DD17 pKa = 3.93VVAPTDD23 pKa = 3.29MSMNLMEE30 pKa = 5.76IIRR33 pKa = 11.84SYY35 pKa = 11.15EE36 pKa = 3.71LAEE39 pKa = 4.26EE40 pKa = 4.58GTIGVCGGMAMCASCQVYY58 pKa = 10.1VINDD62 pKa = 3.73PGLDD66 pKa = 3.36EE67 pKa = 4.72MGAEE71 pKa = 4.21EE72 pKa = 5.26DD73 pKa = 3.93AMLGEE78 pKa = 4.57AFHH81 pKa = 6.82VKK83 pKa = 10.34DD84 pKa = 4.16NSRR87 pKa = 11.84LGCQLHH93 pKa = 6.4IVPEE97 pKa = 4.2MEE99 pKa = 3.93GLEE102 pKa = 4.18VEE104 pKa = 4.35IAPYY108 pKa = 9.53PP109 pKa = 3.68

Molecular weight: 11.85 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1N6REH5|A0A1N6REH5_9FLAO Curli production assembly/transport component CsgG OS=Chryseobacterium sp. RU37D OX=1907397 GN=SAMN05880574_10938 PE=4 SV=1
MM1 pKa = 7.84PSGKK5 pKa = 9.32KK6 pKa = 9.59RR7 pKa = 11.84KK8 pKa = 7.05RR9 pKa = 11.84HH10 pKa = 5.11KK11 pKa = 10.59VATHH15 pKa = 5.21KK16 pKa = 10.3RR17 pKa = 11.84KK18 pKa = 9.62KK19 pKa = 9.04RR20 pKa = 11.84RR21 pKa = 11.84RR22 pKa = 11.84ANRR25 pKa = 11.84HH26 pKa = 4.5KK27 pKa = 10.78KK28 pKa = 9.37KK29 pKa = 10.83

Molecular weight: 3.63 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2783

0

2783

881348

25

2360

316.7

35.82

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.145 ± 0.054

0.736 ± 0.014

5.327 ± 0.032

6.554 ± 0.053

5.475 ± 0.044

6.454 ± 0.048

1.678 ± 0.02

8.135 ± 0.044

8.447 ± 0.053

8.867 ± 0.044

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.387 ± 0.022

6.542 ± 0.042

3.449 ± 0.026

3.434 ± 0.027

3.229 ± 0.029

6.439 ± 0.035

5.519 ± 0.051

5.974 ± 0.035

1.036 ± 0.018

4.17 ± 0.034
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski