Paenibacillus sp. oral taxon 786 str. D14

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus; unclassified Paenibacillus; Paenibacillus sp. oral taxon 786

Average proteome isoelectric point is 6.36

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4460 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|C6J149|C6J149_9BACL PspC domain protein OS=Paenibacillus sp. oral taxon 786 str. D14 OX=621372 GN=POTG_01996 PE=4 SV=1
MM1 pKa = 7.61LIVSEE6 pKa = 4.24IVAFAEE12 pKa = 4.94GVGHH16 pKa = 6.99FYY18 pKa = 10.88GAEE21 pKa = 3.93FTRR24 pKa = 11.84NVAAEE29 pKa = 4.08PSEE32 pKa = 3.82ISVPGGDD39 pKa = 3.74FVTSATSSRR48 pKa = 11.84FTFPKK53 pKa = 10.29LGSACDD59 pKa = 3.5SGQLIVFLDD68 pKa = 3.74AVSTEE73 pKa = 4.06DD74 pKa = 3.79CADD77 pKa = 3.87AEE79 pKa = 4.54VSSYY83 pKa = 11.53

Molecular weight: 8.67 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|C6IWV2|C6IWV2_9BACL Nucleoid occlusion protein OS=Paenibacillus sp. oral taxon 786 str. D14 OX=621372 GN=noc PE=3 SV=1
MM1 pKa = 7.59KK2 pKa = 8.7PTFKK6 pKa = 10.81PNVSKK11 pKa = 10.8RR12 pKa = 11.84KK13 pKa = 8.95KK14 pKa = 8.25VHH16 pKa = 5.49GFRR19 pKa = 11.84KK20 pKa = 10.01RR21 pKa = 11.84MSTKK25 pKa = 10.18NGRR28 pKa = 11.84KK29 pKa = 8.87VLAARR34 pKa = 11.84RR35 pKa = 11.84LKK37 pKa = 10.2GRR39 pKa = 11.84KK40 pKa = 8.79VLSAA44 pKa = 4.05

Molecular weight: 5.09 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4460

0

4460

1399382

22

1883

313.8

34.97

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.479 ± 0.046

0.744 ± 0.01

5.029 ± 0.028

7.082 ± 0.043

4.037 ± 0.027

7.651 ± 0.032

2.045 ± 0.017

6.403 ± 0.035

5.201 ± 0.031

10.295 ± 0.044

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.75 ± 0.016

3.597 ± 0.028

4.251 ± 0.026

3.854 ± 0.026

5.475 ± 0.033

5.87 ± 0.03

5.334 ± 0.031

7.13 ± 0.028

1.318 ± 0.014

3.456 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski