Dermacoccus nishinomiyaensis

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Dermacoccaceae; Dermacoccus

Average proteome isoelectric point is 6.12

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2255 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A075JFS0|A0A075JFS0_9MICO Uncharacterized protein OS=Dermacoccus nishinomiyaensis OX=1274 GN=HX89_06420 PE=4 SV=1
MM1 pKa = 8.05SDD3 pKa = 3.27LQYY6 pKa = 10.81PADD9 pKa = 3.54LRR11 pKa = 11.84YY12 pKa = 8.76TEE14 pKa = 4.03DD15 pKa = 3.95HH16 pKa = 6.54EE17 pKa = 4.53WVADD21 pKa = 3.65KK22 pKa = 11.67GEE24 pKa = 4.12GTVRR28 pKa = 11.84VGITSYY34 pKa = 11.35AQDD37 pKa = 3.3ALGDD41 pKa = 3.79VVYY44 pKa = 11.12VSLPAVGDD52 pKa = 3.69TVTAGEE58 pKa = 4.26SCGEE62 pKa = 4.14VEE64 pKa = 4.43STKK67 pKa = 10.7SVSDD71 pKa = 4.28LYY73 pKa = 11.54SPLDD77 pKa = 3.68GEE79 pKa = 4.41IVAVNDD85 pKa = 3.98TLDD88 pKa = 3.97AEE90 pKa = 4.79PGTVNTDD97 pKa = 3.24PYY99 pKa = 9.85EE100 pKa = 4.51SGWMFEE106 pKa = 4.08IRR108 pKa = 11.84VSDD111 pKa = 4.08ASAVEE116 pKa = 3.74ALMDD120 pKa = 3.63VEE122 pKa = 5.35AYY124 pKa = 9.33RR125 pKa = 11.84ASLDD129 pKa = 3.33

Molecular weight: 13.83 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A075JC91|A0A075JC91_9MICO Urease subunit alpha OS=Dermacoccus nishinomiyaensis OX=1274 GN=ureC PE=3 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.0RR4 pKa = 11.84TFQPNNRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84AKK15 pKa = 8.7THH17 pKa = 5.15GFRR20 pKa = 11.84LRR22 pKa = 11.84MRR24 pKa = 11.84TRR26 pKa = 11.84AGRR29 pKa = 11.84AILANRR35 pKa = 11.84RR36 pKa = 11.84AKK38 pKa = 10.21GRR40 pKa = 11.84KK41 pKa = 8.15QLSAA45 pKa = 3.9

Molecular weight: 5.32 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2255

0

2255

732796

37

1809

325.0

34.86

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.174 ± 0.073

0.754 ± 0.014

6.589 ± 0.041

5.763 ± 0.048

2.959 ± 0.03

8.925 ± 0.043

2.277 ± 0.023

3.976 ± 0.031

2.691 ± 0.042

9.48 ± 0.054

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.174 ± 0.02

2.067 ± 0.026

5.179 ± 0.036

2.793 ± 0.027

7.212 ± 0.047

5.629 ± 0.04

6.094 ± 0.038

8.881 ± 0.05

1.465 ± 0.021

1.92 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski