Marinobacter vulgaris

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter

Average proteome isoelectric point is 6.0

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3437 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2V3ZLS3|A0A2V3ZLS3_9ALTE PilZ domain-containing protein OS=Marinobacter vulgaris OX=1928331 GN=DIT71_08395 PE=4 SV=1
MM1 pKa = 7.95RR2 pKa = 11.84KK3 pKa = 9.69PIALMLGLASVSALAVSQTATADD26 pKa = 3.2IYY28 pKa = 11.31KK29 pKa = 10.48SGGGSLYY36 pKa = 10.98AGLNYY41 pKa = 10.53SFIDD45 pKa = 3.57IEE47 pKa = 4.32SGRR50 pKa = 11.84DD51 pKa = 3.65DD52 pKa = 4.14VDD54 pKa = 3.69VGALSAKK61 pKa = 10.3VGGLVSPYY69 pKa = 10.19FGLEE73 pKa = 3.39ARR75 pKa = 11.84AGFGVDD81 pKa = 4.17DD82 pKa = 4.35DD83 pKa = 4.98QIDD86 pKa = 4.07GVDD89 pKa = 3.51YY90 pKa = 11.42SLDD93 pKa = 3.63NFFGGYY99 pKa = 7.76ATLNLANEE107 pKa = 4.63SPATPYY113 pKa = 10.84LIFGFTRR120 pKa = 11.84IEE122 pKa = 4.1LEE124 pKa = 4.01AQSALGTTTEE134 pKa = 4.52DD135 pKa = 3.36EE136 pKa = 4.37TDD138 pKa = 3.77FSYY141 pKa = 11.1GAGVNVDD148 pKa = 3.39ITPEE152 pKa = 3.82VAGNLEE158 pKa = 3.67YY159 pKa = 10.08MRR161 pKa = 11.84YY162 pKa = 8.55YY163 pKa = 10.54DD164 pKa = 4.41KK165 pKa = 11.51SGATVDD171 pKa = 3.78GLGLGVTFSFF181 pKa = 4.98

Molecular weight: 19.0 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2V4A429|A0A2V4A429_9ALTE Nitrate reductase molybdenum cofactor assembly chaperone OS=Marinobacter vulgaris OX=1928331 GN=narJ PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.34RR12 pKa = 11.84KK13 pKa = 9.1RR14 pKa = 11.84VHH16 pKa = 6.26GFRR19 pKa = 11.84ARR21 pKa = 11.84MATANGRR28 pKa = 11.84KK29 pKa = 9.34VISRR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.41GRR39 pKa = 11.84ARR41 pKa = 11.84LSAA44 pKa = 3.91

Molecular weight: 5.11 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3437

0

3437

1140680

21

2489

331.9

36.62

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.784 ± 0.041

0.926 ± 0.014

5.904 ± 0.035

6.648 ± 0.038

3.8 ± 0.03

7.909 ± 0.032

2.218 ± 0.022

5.347 ± 0.033

3.558 ± 0.04

10.587 ± 0.047

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.624 ± 0.02

3.195 ± 0.021

4.705 ± 0.026

3.86 ± 0.025

6.623 ± 0.04

5.946 ± 0.03

5.135 ± 0.024

7.333 ± 0.03

1.379 ± 0.017

2.52 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski