Rice yellow mottle virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Sobelivirales; Solemoviridae; Sobemovirus

Average proteome isoelectric point is 6.73

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q9DH71|Q9DH71_9VIRU Capsid protein OS=Rice yellow mottle virus OX=31744 GN=CP PE=2 SV=1
MM1 pKa = 7.21TRR3 pKa = 11.84LEE5 pKa = 4.02VLIRR9 pKa = 11.84PTQQTVAKK17 pKa = 9.05AIAVGYY23 pKa = 6.42THH25 pKa = 7.55ALTWVWHH32 pKa = 4.94SQTWDD37 pKa = 2.89VDD39 pKa = 3.92AVSDD43 pKa = 4.2PVLSADD49 pKa = 4.14FNPEE53 pKa = 3.3KK54 pKa = 10.81VGWVSVSFACTRR66 pKa = 11.84CTAHH70 pKa = 6.92YY71 pKa = 7.3YY72 pKa = 9.93TSEE75 pKa = 3.88QVKK78 pKa = 9.43YY79 pKa = 9.57FVNIPPVHH87 pKa = 6.52YY88 pKa = 10.56DD89 pKa = 3.55VVCADD94 pKa = 4.57CEE96 pKa = 4.13RR97 pKa = 11.84SVQQDD102 pKa = 3.48DD103 pKa = 4.48EE104 pKa = 4.7IDD106 pKa = 3.74RR107 pKa = 11.84EE108 pKa = 4.06HH109 pKa = 7.61DD110 pKa = 3.29EE111 pKa = 4.3RR112 pKa = 11.84NAEE115 pKa = 3.79ISACNARR122 pKa = 11.84ALSEE126 pKa = 4.13GRR128 pKa = 11.84PASLVYY134 pKa = 10.44LSRR137 pKa = 11.84DD138 pKa = 3.07ACDD141 pKa = 3.44IPEE144 pKa = 4.24HH145 pKa = 6.76SGTCRR150 pKa = 11.84FDD152 pKa = 3.18KK153 pKa = 10.97YY154 pKa = 11.58LNFF157 pKa = 4.56

Molecular weight: 17.82 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q9DH71|Q9DH71_9VIRU Capsid protein OS=Rice yellow mottle virus OX=31744 GN=CP PE=2 SV=1
MM1 pKa = 7.29ARR3 pKa = 11.84KK4 pKa = 9.21GKK6 pKa = 8.36KK7 pKa = 7.99TNSNQGQQGKK17 pKa = 9.92RR18 pKa = 11.84KK19 pKa = 8.91GRR21 pKa = 11.84RR22 pKa = 11.84PRR24 pKa = 11.84GRR26 pKa = 11.84SAEE29 pKa = 4.1PQLQRR34 pKa = 11.84APVAQASRR42 pKa = 11.84ISGTVPGPLSSNTWPLHH59 pKa = 4.61SVEE62 pKa = 4.68FLADD66 pKa = 4.59FKK68 pKa = 11.12RR69 pKa = 11.84SSTSADD75 pKa = 2.85ATTYY79 pKa = 11.22DD80 pKa = 4.09CVPFNLPRR88 pKa = 11.84VWSLARR94 pKa = 11.84CYY96 pKa = 11.33SMWKK100 pKa = 6.65PTRR103 pKa = 11.84WDD105 pKa = 3.27VVYY108 pKa = 10.44LPEE111 pKa = 4.59VSATVAGSIEE121 pKa = 4.04MCFLYY126 pKa = 10.32DD127 pKa = 3.68YY128 pKa = 11.33ADD130 pKa = 4.86TIPSDD135 pKa = 3.41TGKK138 pKa = 9.75MSRR141 pKa = 11.84TAGFVTSSVWYY152 pKa = 9.41GAEE155 pKa = 4.21GCHH158 pKa = 6.29LLSGGSARR166 pKa = 11.84NAVVASMDD174 pKa = 3.68CSRR177 pKa = 11.84VGWKK181 pKa = 9.93RR182 pKa = 11.84VTSSIPSSVDD192 pKa = 3.03PNVVNTILPARR203 pKa = 11.84LAVRR207 pKa = 11.84SSIKK211 pKa = 9.37PTVSDD216 pKa = 3.84TPGKK220 pKa = 10.24LYY222 pKa = 11.0VIASMVLRR230 pKa = 11.84DD231 pKa = 4.13PVDD234 pKa = 3.43PTLNTT239 pKa = 3.52

Molecular weight: 25.96 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

1505

157

605

376.3

41.4

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.508 ± 0.504

2.326 ± 0.578

5.05 ± 0.595

5.847 ± 0.984

3.256 ± 0.424

7.375 ± 0.91

2.458 ± 0.431

4.12 ± 0.318

4.186 ± 0.466

7.508 ± 0.789

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.329 ± 0.292

2.99 ± 0.173

6.246 ± 0.502

3.256 ± 0.438

6.91 ± 0.589

11.096 ± 1.381

5.449 ± 0.837

8.173 ± 0.882

2.259 ± 0.576

2.658 ± 0.407
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski