Acrocarpospora corrugata

Taxonomy:

Average proteome isoelectric point is 6.47

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8466 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5M3W957|A0A5M3W957_9ACTN Uncharacterized protein OS=Acrocarpospora corrugata OX=35763 GN=Acor_74720 PE=4 SV=1
MM1 pKa = 7.92LIRR4 pKa = 11.84HH5 pKa = 5.81SEE7 pKa = 4.16ALDD10 pKa = 3.53TADD13 pKa = 4.79DD14 pKa = 3.76QFHH17 pKa = 7.12PEE19 pKa = 3.87FVEE22 pKa = 5.05RR23 pKa = 11.84DD24 pKa = 3.08WDD26 pKa = 3.76DD27 pKa = 3.47DD28 pKa = 3.72AFYY31 pKa = 10.77DD32 pKa = 3.91YY33 pKa = 11.49YY34 pKa = 11.2RR35 pKa = 11.84DD36 pKa = 3.65AYY38 pKa = 9.59EE39 pKa = 4.22TFLDD43 pKa = 4.02AMPTEE48 pKa = 5.13PYY50 pKa = 9.09DD51 pKa = 3.45TT52 pKa = 4.44

Molecular weight: 6.34 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5M3VTQ2|A0A5M3VTQ2_9ACTN Uncharacterized protein OS=Acrocarpospora corrugata OX=35763 GN=Acor_16620 PE=4 SV=1
MM1 pKa = 7.26AAARR5 pKa = 11.84VADD8 pKa = 4.75RR9 pKa = 11.84SPAPGRR15 pKa = 11.84LRR17 pKa = 11.84RR18 pKa = 11.84SVPPFRR24 pKa = 11.84VFPPVAVPAAVVRR37 pKa = 11.84PVPVARR43 pKa = 11.84SRR45 pKa = 11.84ARR47 pKa = 11.84VARR50 pKa = 11.84VRR52 pKa = 11.84ATTRR56 pKa = 11.84SRR58 pKa = 11.84PTPVAWVSVRR68 pKa = 11.84RR69 pKa = 11.84VRR71 pKa = 11.84AAPVTVPIVATVPSAPVSTVVTVPIAGRR99 pKa = 11.84VRR101 pKa = 11.84IVVPVRR107 pKa = 11.84TVVPASRR114 pKa = 11.84VATATAVRR122 pKa = 11.84VPAVPVRR129 pKa = 11.84VPRR132 pKa = 11.84APVAVPVPARR142 pKa = 11.84PARR145 pKa = 11.84VARR148 pKa = 11.84VPVLVPVVPVRR159 pKa = 11.84PQARR163 pKa = 11.84VVRR166 pKa = 11.84VPVVRR171 pKa = 11.84VPTRR175 pKa = 11.84RR176 pKa = 3.28

Molecular weight: 18.64 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8466

0

8466

2731098

39

7610

322.6

34.69

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.03 ± 0.04

0.774 ± 0.007

5.832 ± 0.021

5.418 ± 0.025

2.941 ± 0.018

9.185 ± 0.027

2.172 ± 0.012

3.952 ± 0.017

2.058 ± 0.02

10.578 ± 0.037

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.832 ± 0.011

2.05 ± 0.019

6.063 ± 0.023

2.837 ± 0.014

7.902 ± 0.035

5.129 ± 0.018

6.081 ± 0.028

8.388 ± 0.025

1.616 ± 0.011

2.163 ± 0.014
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski