Phytophthora parasitica virus

Taxonomy: Viruses; unclassified viruses

Average proteome isoelectric point is 5.89

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0C5AP07|A0A0C5AP07_9VIRU Isolate 1 ORF3 putative replication protein and putative capsid protein genes OS=Phytophthora parasitica virus OX=1608451 PE=4 SV=1
MM1 pKa = 7.47AHH3 pKa = 6.02EE4 pKa = 4.01QHH6 pKa = 6.57HH7 pKa = 6.61NIVTEE12 pKa = 4.07LVEE15 pKa = 4.22SFIVEE20 pKa = 4.13EE21 pKa = 4.26NKK23 pKa = 10.52ALHH26 pKa = 6.73DD27 pKa = 4.12KK28 pKa = 10.94LRR30 pKa = 11.84TALNEE35 pKa = 3.88AQALRR40 pKa = 11.84LRR42 pKa = 11.84LTRR45 pKa = 11.84LNTLYY50 pKa = 11.52NMAGGLNGRR59 pKa = 11.84MQQEE63 pKa = 4.13LRR65 pKa = 11.84DD66 pKa = 3.54LHH68 pKa = 6.82AAIEE72 pKa = 4.16MMDD75 pKa = 4.39LIARR79 pKa = 11.84EE80 pKa = 3.92YY81 pKa = 10.64FINNAEE87 pKa = 3.96ARR89 pKa = 11.84ARR91 pKa = 11.84WAPYY95 pKa = 9.88CAFEE99 pKa = 5.81DD100 pKa = 5.06DD101 pKa = 4.54EE102 pKa = 4.48FHH104 pKa = 7.49HH105 pKa = 7.2LIAEE109 pKa = 4.42ANAGFPSDD117 pKa = 3.82LAIVMEE123 pKa = 4.34PTQEE127 pKa = 4.78DD128 pKa = 3.71EE129 pKa = 4.45DD130 pKa = 4.99DD131 pKa = 4.02RR132 pKa = 11.84DD133 pKa = 3.84SVIDD137 pKa = 3.6ILEE140 pKa = 4.25LTEE143 pKa = 4.68KK144 pKa = 10.54EE145 pKa = 4.17MRR147 pKa = 11.84DD148 pKa = 3.76FMDD151 pKa = 3.13VV152 pKa = 2.91

Molecular weight: 17.61 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0C5ALV9|A0A0C5ALV9_9VIRU Isolate 1 ORF3 putative replication protein and putative capsid protein genes OS=Phytophthora parasitica virus OX=1608451 PE=4 SV=1
MM1 pKa = 7.38APLVPFHH8 pKa = 6.36TMDD11 pKa = 3.74RR12 pKa = 11.84QWDD15 pKa = 3.43ARR17 pKa = 11.84FNVPTDD23 pKa = 3.54EE24 pKa = 5.04DD25 pKa = 4.55LEE27 pKa = 4.84ALLLNVKK34 pKa = 10.34SEE36 pKa = 3.79VDD38 pKa = 3.09QGKK41 pKa = 8.34FQYY44 pKa = 10.47CLVGGVEE51 pKa = 4.06IGDD54 pKa = 3.45RR55 pKa = 11.84PYY57 pKa = 10.14QTDD60 pKa = 3.57YY61 pKa = 11.11LIKK64 pKa = 9.15HH65 pKa = 4.65VHH67 pKa = 5.3VALVYY72 pKa = 10.54NNRR75 pKa = 11.84VSKK78 pKa = 11.19NSVLKK83 pKa = 10.65NLQIKK88 pKa = 9.0QGNGYY93 pKa = 9.62YY94 pKa = 10.34LVPRR98 pKa = 11.84NRR100 pKa = 11.84DD101 pKa = 3.12LPIQGWIDD109 pKa = 3.12HH110 pKa = 5.78HH111 pKa = 6.51TKK113 pKa = 10.64SKK115 pKa = 10.07TKK117 pKa = 10.16INEE120 pKa = 3.74DD121 pKa = 3.33FKK123 pKa = 11.19LYY125 pKa = 10.62EE126 pKa = 4.41YY127 pKa = 9.21GTLPADD133 pKa = 3.97KK134 pKa = 9.95PNISAQVTKK143 pKa = 10.7RR144 pKa = 11.84SPEE147 pKa = 3.81EE148 pKa = 3.85KK149 pKa = 9.84KK150 pKa = 10.67RR151 pKa = 11.84KK152 pKa = 9.51LDD154 pKa = 3.81DD155 pKa = 4.03VIKK158 pKa = 10.27EE159 pKa = 3.84MRR161 pKa = 11.84GMIEE165 pKa = 3.71EE166 pKa = 4.28GRR168 pKa = 11.84EE169 pKa = 3.65EE170 pKa = 3.78EE171 pKa = 4.77AFTKK175 pKa = 10.43FPRR178 pKa = 11.84NYY180 pKa = 8.62LTYY183 pKa = 10.53GEE185 pKa = 4.83KK186 pKa = 10.15LKK188 pKa = 11.43AMISQRR194 pKa = 11.84RR195 pKa = 11.84DD196 pKa = 3.21FFKK199 pKa = 11.26SNGDD203 pKa = 3.21PHH205 pKa = 7.75IWLTGTPGSGKK216 pKa = 10.08SAILQVIYY224 pKa = 9.42PAYY227 pKa = 10.09YY228 pKa = 10.59NKK230 pKa = 10.47NLDD233 pKa = 3.24NRR235 pKa = 11.84FFDD238 pKa = 4.51LYY240 pKa = 9.83QPKK243 pKa = 9.44VHH245 pKa = 5.45THH247 pKa = 5.74MLLQDD252 pKa = 3.48VDD254 pKa = 3.69HH255 pKa = 6.33TTVEE259 pKa = 4.07KK260 pKa = 11.04LGVQFLKK267 pKa = 9.97TICDD271 pKa = 3.43EE272 pKa = 4.43AGFPVDD278 pKa = 4.12QKK280 pKa = 11.81YY281 pKa = 7.52KK282 pKa = 9.13TPQLARR288 pKa = 11.84TTVLVSSNFTINDD301 pKa = 4.09VIPEE305 pKa = 4.14DD306 pKa = 3.5MPGRR310 pKa = 11.84NEE312 pKa = 3.8NLTALRR318 pKa = 11.84RR319 pKa = 11.84RR320 pKa = 11.84FYY322 pKa = 10.4EE323 pKa = 3.86VNVRR327 pKa = 11.84VLLQILGLKK336 pKa = 9.97LLSKK340 pKa = 11.34YY341 pKa = 9.4EE342 pKa = 4.04LNGLKK347 pKa = 10.14RR348 pKa = 11.84VGNQDD353 pKa = 3.07PTKK356 pKa = 11.06LFMSWDD362 pKa = 3.7YY363 pKa = 11.28TRR365 pKa = 11.84DD366 pKa = 3.31IPTGEE371 pKa = 4.07SLKK374 pKa = 9.76TAKK377 pKa = 10.06EE378 pKa = 3.81YY379 pKa = 10.29QQIIKK384 pKa = 10.16DD385 pKa = 3.71HH386 pKa = 6.4YY387 pKa = 9.56YY388 pKa = 9.14GTNTSPHH395 pKa = 6.31SSQQ398 pKa = 3.59

Molecular weight: 46.12 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3

0

3

996

152

446

332.0

37.79

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.124 ± 1.951

0.602 ± 0.05

7.229 ± 0.428

6.526 ± 1.919

3.514 ± 0.233

6.627 ± 1.571

2.51 ± 0.768

4.518 ± 0.625

5.823 ± 1.58

9.237 ± 0.816

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.108 ± 1.051

7.329 ± 1.095

4.92 ± 0.947

3.916 ± 0.558

5.321 ± 0.695

4.819 ± 1.03

6.124 ± 0.691

6.325 ± 0.755

1.104 ± 0.177

5.321 ± 1.142
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski