Halomonas beimenensis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas

Average proteome isoelectric point is 6.2

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3771 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A291P556|A0A291P556_9GAMM Uncharacterized protein OS=Halomonas beimenensis OX=475662 GN=BEI_1030 PE=4 SV=1
MM1 pKa = 7.18KK2 pKa = 10.01TMHH5 pKa = 7.64LITATAFAAAGLVAAQSAYY24 pKa = 10.4AYY26 pKa = 9.67QAGDD30 pKa = 3.01IYY32 pKa = 11.49VRR34 pKa = 11.84GGIAKK39 pKa = 8.98TEE41 pKa = 4.04VTDD44 pKa = 5.13DD45 pKa = 3.56NGTLDD50 pKa = 3.42VAGEE54 pKa = 4.15LDD56 pKa = 3.82ISDD59 pKa = 4.34EE60 pKa = 4.21SHH62 pKa = 6.56LAYY65 pKa = 10.51ALGYY69 pKa = 10.12LFHH72 pKa = 7.67DD73 pKa = 3.49KK74 pKa = 10.4WGMEE78 pKa = 3.97LSGAEE83 pKa = 4.06PVEE86 pKa = 4.3HH87 pKa = 6.43QLNTGNLGDD96 pKa = 3.41IGGVDD101 pKa = 3.9RR102 pKa = 11.84MPVNLMVNYY111 pKa = 9.83YY112 pKa = 9.74PLGGTGAKK120 pKa = 8.37VQPYY124 pKa = 9.84VGAGLNYY131 pKa = 9.72TRR133 pKa = 11.84FSDD136 pKa = 4.31EE137 pKa = 4.38EE138 pKa = 4.58LDD140 pKa = 4.0GLDD143 pKa = 4.36VDD145 pKa = 4.64EE146 pKa = 4.82SWGAVGQVGVDD157 pKa = 3.73LAITDD162 pKa = 3.95YY163 pKa = 11.57LLAGAFARR171 pKa = 11.84YY172 pKa = 9.93ADD174 pKa = 3.39VDD176 pKa = 3.78ADD178 pKa = 3.86VSVGGTDD185 pKa = 2.79IGEE188 pKa = 4.41AEE190 pKa = 4.52VDD192 pKa = 3.44PMTVGGVLTFRR203 pKa = 11.84FF204 pKa = 3.96

Molecular weight: 21.45 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A291P291|A0A291P291_9GAMM Beta sliding clamp OS=Halomonas beimenensis OX=475662 GN=BEI_0002 PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.42RR12 pKa = 11.84KK13 pKa = 9.04RR14 pKa = 11.84AHH16 pKa = 6.12GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.3NGRR28 pKa = 11.84AVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.93GRR39 pKa = 11.84KK40 pKa = 8.85RR41 pKa = 11.84LSAA44 pKa = 3.96

Molecular weight: 5.12 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3771

0

3771

1196699

30

1623

317.3

34.74

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.035 ± 0.055

0.947 ± 0.014

5.839 ± 0.034

6.79 ± 0.045

3.336 ± 0.026

8.675 ± 0.037

2.501 ± 0.019

4.161 ± 0.03

2.214 ± 0.03

11.781 ± 0.054

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.348 ± 0.018

2.075 ± 0.024

5.326 ± 0.032

3.321 ± 0.025

8.225 ± 0.048

4.698 ± 0.025

4.763 ± 0.026

7.259 ± 0.031

1.501 ± 0.02

2.205 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski