Desulfuromonas sp. DDH964

Taxonomy: cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Desulfuromonadales; Desulfuromonadaceae; Desulfuromonas; unclassified Desulfuromonas

Average proteome isoelectric point is 6.57

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3483 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A143B473|A0A143B473_9DELT UbiD family decarboxylase OS=Desulfuromonas sp. DDH964 OX=1823759 GN=DBW_0493 PE=4 SV=1
MM1 pKa = 6.86IQRR4 pKa = 11.84RR5 pKa = 11.84LLKK8 pKa = 9.02WLPVAMLAAFLLAGCSGDD26 pKa = 3.5NSSQGTPAGKK36 pKa = 10.02DD37 pKa = 2.97AVAQKK42 pKa = 9.94ATVTFKK48 pKa = 11.25VQFPEE53 pKa = 4.25SAVQKK58 pKa = 11.31AMIDD62 pKa = 3.56DD63 pKa = 3.9RR64 pKa = 11.84TVSVQVQWGDD74 pKa = 3.38YY75 pKa = 9.34YY76 pKa = 11.35NYY78 pKa = 10.96SFIDD82 pKa = 4.53SITLTPDD89 pKa = 2.8SSGMATATVTVPVGMLQFTAWANDD113 pKa = 3.52ANGMEE118 pKa = 4.92LEE120 pKa = 4.61MISTAGDD127 pKa = 3.06IVEE130 pKa = 4.76GNNTVYY136 pKa = 9.91LTFLGGDD143 pKa = 3.58WQFVDD148 pKa = 5.47ANDD151 pKa = 3.73APMPLSVGTGASSRR165 pKa = 11.84TLTGFSLGSAYY176 pKa = 10.81SHH178 pKa = 6.19GMYY181 pKa = 10.64AKK183 pKa = 10.64AKK185 pKa = 9.51VDD187 pKa = 3.36YY188 pKa = 7.62TKK190 pKa = 11.09PMGYY194 pKa = 10.34GDD196 pKa = 5.61YY197 pKa = 10.52RR198 pKa = 11.84LQWFDD203 pKa = 2.9TAGAVGSQMAAWADD217 pKa = 3.45NQLIGGVTNNTAFGSDD233 pKa = 3.8MLNLTTPANSDD244 pKa = 3.31NFSFWSFATAGDD256 pKa = 3.22RR257 pKa = 11.84VLFVVNSGPDD267 pKa = 2.84SGTIKK272 pKa = 10.82DD273 pKa = 3.82GAGNDD278 pKa = 3.4LTGAIDD284 pKa = 3.91AVADD288 pKa = 3.87AQILDD293 pKa = 3.72GTHH296 pKa = 6.46ISGHH300 pKa = 5.1LLEE303 pKa = 4.54MTFDD307 pKa = 3.83SVTGIQTPTRR317 pKa = 11.84TNIDD321 pKa = 3.55CAPYY325 pKa = 8.0WTYY328 pKa = 11.69AGAARR333 pKa = 11.84SAAIKK338 pKa = 10.29AAFASSSQGPAKK350 pKa = 10.18AAPGDD355 pKa = 4.07SSTVTATLVAAYY367 pKa = 8.01EE368 pKa = 4.25EE369 pKa = 5.5CNQQPYY375 pKa = 10.33QIDD378 pKa = 3.64GDD380 pKa = 3.96GDD382 pKa = 3.42QDD384 pKa = 3.33FWYY387 pKa = 10.87GDD389 pKa = 3.56YY390 pKa = 10.66LTFDD394 pKa = 4.0FNSNNRR400 pKa = 11.84YY401 pKa = 10.04DD402 pKa = 3.95PADD405 pKa = 3.79GDD407 pKa = 4.29TYY409 pKa = 11.48QDD411 pKa = 3.67TNNDD415 pKa = 3.18GNFDD419 pKa = 3.69FMIYY423 pKa = 10.29NQVDD427 pKa = 3.33GDD429 pKa = 4.07GDD431 pKa = 4.69GDD433 pKa = 4.14MLWDD437 pKa = 3.69YY438 pKa = 10.52MIVDD442 pKa = 3.8VNHH445 pKa = 6.58NGRR448 pKa = 11.84YY449 pKa = 9.21DD450 pKa = 3.46AADD453 pKa = 3.66GDD455 pKa = 4.7TYY457 pKa = 11.47QDD459 pKa = 3.3TDD461 pKa = 3.39SDD463 pKa = 4.09GKK465 pKa = 10.95FDD467 pKa = 4.45FVYY470 pKa = 10.55TPGDD474 pKa = 3.7LYY476 pKa = 11.21AITEE480 pKa = 4.27TFSNVVARR488 pKa = 11.84EE489 pKa = 3.63FRR491 pKa = 11.84ARR493 pKa = 11.84GSQIISQFTPSVLGTWGPAGYY514 pKa = 10.92QMTGQGFAVSFLDD527 pKa = 3.36ATHH530 pKa = 6.74YY531 pKa = 10.71IHH533 pKa = 7.66VEE535 pKa = 3.85DD536 pKa = 6.18GIPDD540 pKa = 3.78TDD542 pKa = 5.4PITGNIIGGPGMEE555 pKa = 4.21YY556 pKa = 9.23GTYY559 pKa = 10.33SVNATTGDD567 pKa = 3.61VTFTASKK574 pKa = 9.55DD575 pKa = 3.59TTGDD579 pKa = 2.88WGPAGTGTQVINFQFLDD596 pKa = 3.65NNHH599 pKa = 5.81FQITDD604 pKa = 3.74PVDD607 pKa = 3.34STTQTLGRR615 pKa = 11.84VTSNWNSAVGSWKK628 pKa = 10.42FGSEE632 pKa = 3.91ALGMQVVTLFEE643 pKa = 4.54GGNYY647 pKa = 9.51LVASSGPPGTSNLDD661 pKa = 3.33GMEE664 pKa = 4.12SGTYY668 pKa = 9.67SFQTISEE675 pKa = 4.69SIDD678 pKa = 3.13GTVTANITFNGMNSTIPDD696 pKa = 3.69LNDD699 pKa = 3.31TVIAAPGTSVTMPITMTNHH718 pKa = 5.7GNTIEE723 pKa = 4.13FDD725 pKa = 3.86NNGTPVAFSRR735 pKa = 11.84VQQ737 pKa = 2.84

Molecular weight: 78.58 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A143BCB7|A0A143BCB7_9DELT Alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase OS=Desulfuromonas sp. DDH964 OX=1823759 GN=phnM PE=4 SV=1
MM1 pKa = 7.74SKK3 pKa = 8.94RR4 pKa = 11.84TYY6 pKa = 9.71QPSRR10 pKa = 11.84VSRR13 pKa = 11.84KK14 pKa = 7.52RR15 pKa = 11.84THH17 pKa = 6.29GFRR20 pKa = 11.84KK21 pKa = 10.07RR22 pKa = 11.84MQSKK26 pKa = 10.01NGRR29 pKa = 11.84IVIKK33 pKa = 10.27RR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84AKK38 pKa = 9.86GRR40 pKa = 11.84KK41 pKa = 8.29NLVVTIPSKK50 pKa = 10.99

Molecular weight: 5.98 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3483

0

3483

1134986

29

3962

325.9

35.71

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.899 ± 0.06

1.208 ± 0.02

5.1 ± 0.027

6.425 ± 0.045

3.965 ± 0.03

8.41 ± 0.039

1.994 ± 0.021

5.107 ± 0.035

3.593 ± 0.039

11.844 ± 0.068

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.022 ± 0.02

2.755 ± 0.031

5.053 ± 0.036

3.653 ± 0.024

7.091 ± 0.051

5.121 ± 0.031

4.989 ± 0.052

7.139 ± 0.037

1.135 ± 0.016

2.497 ± 0.025
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski