Bacteroides finegoldii CL09T03C10

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides finegoldii

Average proteome isoelectric point is 6.44

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4159 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|K5BUP7|K5BUP7_9BACE Uncharacterized protein OS=Bacteroides finegoldii CL09T03C10 OX=997888 GN=HMPREF1057_00767 PE=4 SV=1
MM1 pKa = 6.39THH3 pKa = 6.41YY4 pKa = 10.49EE5 pKa = 3.99IEE7 pKa = 4.05QGLNALYY14 pKa = 10.62KK15 pKa = 10.59DD16 pKa = 4.05LNNVQDD22 pKa = 3.82MDD24 pKa = 3.71EE25 pKa = 4.05ATARR29 pKa = 11.84RR30 pKa = 11.84VYY32 pKa = 10.93NVDD35 pKa = 3.33CKK37 pKa = 11.36ADD39 pKa = 3.46IIEE42 pKa = 4.52VIEE45 pKa = 4.2EE46 pKa = 4.33EE47 pKa = 3.95IDD49 pKa = 3.34TYY51 pKa = 11.0EE52 pKa = 5.27AILSGPDD59 pKa = 3.15TDD61 pKa = 4.96EE62 pKa = 5.61DD63 pKa = 4.16NDD65 pKa = 3.42MDD67 pKa = 4.8YY68 pKa = 11.52DD69 pKa = 4.23ALCLIQGLSRR79 pKa = 11.84YY80 pKa = 9.07AA81 pKa = 3.39

Molecular weight: 9.28 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|K5CPS6|K5CPS6_9BACE Uncharacterized protein OS=Bacteroides finegoldii CL09T03C10 OX=997888 GN=HMPREF1057_00626 PE=4 SV=1
MM1 pKa = 7.67RR2 pKa = 11.84ALAANNQNVSRR13 pKa = 11.84GGINRR18 pKa = 11.84QGRR21 pKa = 11.84ILRR24 pKa = 11.84ANAGALLPIYY34 pKa = 9.86QRR36 pKa = 11.84QGNRR40 pKa = 11.84AAVNAMRR47 pKa = 11.84SRR49 pKa = 11.84LGLTNGG55 pKa = 3.54

Molecular weight: 5.9 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4159

0

4159

1522812

29

2521

366.1

41.42

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.864 ± 0.029

1.229 ± 0.013

5.545 ± 0.028

6.752 ± 0.04

4.547 ± 0.022

6.772 ± 0.038

1.799 ± 0.017

6.933 ± 0.036

6.884 ± 0.034

9.0 ± 0.04

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.745 ± 0.015

5.193 ± 0.028

3.685 ± 0.019

3.463 ± 0.022

4.604 ± 0.025

6.118 ± 0.035

5.629 ± 0.03

6.374 ± 0.029

1.302 ± 0.014

4.562 ± 0.026
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski