Inquilinus limosus MP06

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus; Inquilinus limosus

Average proteome isoelectric point is 6.51

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6228 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0A0DEN5|A0A0A0DEN5_9PROT Lon protease OS=Inquilinus limosus MP06 OX=1398085 GN=lon PE=2 SV=1
MM1 pKa = 7.31NVNISIDD8 pKa = 3.44IPISRR13 pKa = 11.84IADD16 pKa = 3.86LVCNCFEE23 pKa = 4.44GSYY26 pKa = 10.55SPWIGSANLAPGEE39 pKa = 4.02HH40 pKa = 7.43AIPGLVFWAQPLLYY54 pKa = 8.71EE55 pKa = 4.14QPRR58 pKa = 11.84FGIVVTYY65 pKa = 10.01DD66 pKa = 3.44GPDD69 pKa = 3.44DD70 pKa = 5.04DD71 pKa = 5.09EE72 pKa = 6.94GSFASQKK79 pKa = 9.92TITLEE84 pKa = 3.84DD85 pKa = 3.45LRR87 pKa = 11.84KK88 pKa = 10.2GLEE91 pKa = 4.0LMAKK95 pKa = 9.62EE96 pKa = 4.39EE97 pKa = 4.63PYY99 pKa = 10.9QFGNFLSDD107 pKa = 3.32NDD109 pKa = 4.23DD110 pKa = 5.04AITADD115 pKa = 3.19TFMQLVVLGEE125 pKa = 4.11VVYY128 pKa = 10.79GG129 pKa = 3.79

Molecular weight: 14.21 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0A0D1K5|A0A0A0D1K5_9PROT LacI family transcriptional regulator OS=Inquilinus limosus MP06 OX=1398085 GN=P409_24780 PE=4 SV=1
MM1 pKa = 7.69AKK3 pKa = 8.66TAKK6 pKa = 10.02AAPAEE11 pKa = 4.21TSEE14 pKa = 4.04GRR16 pKa = 11.84CLCGRR21 pKa = 11.84VRR23 pKa = 11.84VEE25 pKa = 3.49IGVPARR31 pKa = 11.84WAWHH35 pKa = 4.99DD36 pKa = 3.19HH37 pKa = 4.96SRR39 pKa = 11.84NSRR42 pKa = 11.84LAHH45 pKa = 5.42GAAYY49 pKa = 7.77ATYY52 pKa = 8.58VGCWRR57 pKa = 11.84SRR59 pKa = 11.84VRR61 pKa = 11.84IVKK64 pKa = 10.41GEE66 pKa = 3.92SALARR71 pKa = 11.84FTEE74 pKa = 4.53EE75 pKa = 3.35EE76 pKa = 3.92TGRR79 pKa = 11.84IRR81 pKa = 11.84SFCRR85 pKa = 11.84HH86 pKa = 6.47CGTPVLYY93 pKa = 9.74EE94 pKa = 4.28RR95 pKa = 11.84PHH97 pKa = 6.36APQMVNIPRR106 pKa = 11.84ALFEE110 pKa = 4.29TRR112 pKa = 11.84TGRR115 pKa = 11.84EE116 pKa = 3.79PLYY119 pKa = 10.85HH120 pKa = 7.65IGIEE124 pKa = 4.52QARR127 pKa = 11.84EE128 pKa = 3.96WTWRR132 pKa = 11.84GEE134 pKa = 3.93PLRR137 pKa = 11.84PLKK140 pKa = 10.57GFPGVVWTGPKK151 pKa = 9.46RR152 pKa = 11.84RR153 pKa = 11.84KK154 pKa = 9.38KK155 pKa = 10.6RR156 pKa = 11.84PLLDD160 pKa = 3.33EE161 pKa = 4.62AFF163 pKa = 4.01

Molecular weight: 18.64 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6228

0

6228

1722682

26

1966

276.6

29.84

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.301 ± 0.041

0.796 ± 0.009

5.84 ± 0.028

5.268 ± 0.027

3.571 ± 0.017

9.208 ± 0.034

1.966 ± 0.016

4.88 ± 0.024

2.547 ± 0.026

10.609 ± 0.04

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.259 ± 0.014

2.14 ± 0.018

5.657 ± 0.021

3.047 ± 0.018

7.588 ± 0.033

4.707 ± 0.019

5.216 ± 0.021

7.715 ± 0.024

1.478 ± 0.015

2.206 ± 0.016
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski