Amino acid dipepetide frequency for Eimeria brunetti RNA virus 1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
16.939AlaAla: 16.939 ± 0.84
1.815AlaCys: 1.815 ± 0.345
6.05AlaAsp: 6.05 ± 1.439
6.655AlaGlu: 6.655 ± 1.634
2.42AlaPhe: 2.42 ± 0.12
7.864AlaGly: 7.864 ± 0.045
1.21AlaHis: 1.21 ± 0.06
4.235AlaIle: 4.235 ± 0.645
5.445AlaLys: 5.445 ± 1.574
9.074AlaLeu: 9.074 ± 0.885
3.025AlaMet: 3.025 ± 2.024
4.235AlaAsn: 4.235 ± 2.384
3.63AlaPro: 3.63 ± 0.18
1.815AlaGln: 1.815 ± 0.345
6.05AlaArg: 6.05 ± 2.309
5.445AlaSer: 5.445 ± 0.165
7.864AlaThr: 7.864 ± 2.564
9.679AlaVal: 9.679 ± 0.39
1.815AlaTrp: 1.815 ± 1.215
3.63AlaTyr: 3.63 ± 1.559
0.0AlaXaa: 0.0 ± 0.0
Cys
3.025CysAla: 3.025 ± 1.454
0.605CysCys: 0.605 ± 0.405
1.815CysAsp: 1.815 ± 0.345
0.605CysGlu: 0.605 ± 0.405
0.0CysPhe: 0.0 ± 0.0
2.42CysGly: 2.42 ± 0.99
1.21CysHis: 1.21 ± 0.93
0.0CysIle: 0.0 ± 0.0
1.21CysLys: 1.21 ± 0.93
1.815CysLeu: 1.815 ± 0.345
0.0CysMet: 0.0 ± 0.0
0.605CysAsn: 0.605 ± 0.405
1.21CysPro: 1.21 ± 0.06
0.0CysGln: 0.0 ± 0.0
0.605CysArg: 0.605 ± 0.405
0.605CysSer: 0.605 ± 0.465
1.21CysThr: 1.21 ± 0.06
4.235CysVal: 4.235 ± 1.095
0.0CysTrp: 0.0 ± 0.0
1.21CysTyr: 1.21 ± 0.81
0.0CysXaa: 0.0 ± 0.0
Asp
6.655AspAla: 6.655 ± 0.975
0.605AspCys: 0.605 ± 0.405
3.025AspAsp: 3.025 ± 1.155
1.815AspGlu: 1.815 ± 0.345
1.815AspPhe: 1.815 ± 1.215
3.63AspGly: 3.63 ± 2.789
1.815AspHis: 1.815 ± 1.215
0.605AspIle: 0.605 ± 0.405
0.0AspLys: 0.0 ± 0.0
5.445AspLeu: 5.445 ± 1.574
2.42AspMet: 2.42 ± 0.99
0.605AspAsn: 0.605 ± 0.465
1.815AspPro: 1.815 ± 0.525
1.21AspGln: 1.21 ± 0.81
0.605AspArg: 0.605 ± 0.405
2.42AspSer: 2.42 ± 0.12
2.42AspThr: 2.42 ± 0.75
3.025AspVal: 3.025 ± 0.285
0.605AspTrp: 0.605 ± 0.465
1.815AspTyr: 1.815 ± 0.345
0.0AspXaa: 0.0 ± 0.0
Glu
4.235GluAla: 4.235 ± 1.095
1.21GluCys: 1.21 ± 0.06
3.63GluAsp: 3.63 ± 0.18
5.445GluGlu: 5.445 ± 0.705
2.42GluPhe: 2.42 ± 0.75
3.025GluGly: 3.025 ± 0.585
1.815GluHis: 1.815 ± 0.345
1.815GluIle: 1.815 ± 0.525
1.815GluLys: 1.815 ± 1.215
5.445GluLeu: 5.445 ± 0.165
1.21GluMet: 1.21 ± 0.06
0.0GluAsn: 0.0 ± 0.0
3.025GluPro: 3.025 ± 0.585
0.605GluGln: 0.605 ± 0.405
3.025GluArg: 3.025 ± 0.285
3.025GluSer: 3.025 ± 0.585
2.42GluThr: 2.42 ± 0.12
3.63GluVal: 3.63 ± 1.919
3.025GluTrp: 3.025 ± 1.155
0.0GluTyr: 0.0 ± 0.0
0.0GluXaa: 0.0 ± 0.0
Phe
1.21PheAla: 1.21 ± 0.93
0.0PheCys: 0.0 ± 0.0
0.605PheAsp: 0.605 ± 0.465
1.815PheGlu: 1.815 ± 0.525
1.815PhePhe: 1.815 ± 0.525
2.42PheGly: 2.42 ± 0.99
0.605PheHis: 0.605 ± 0.405
0.0PheIle: 0.0 ± 0.0
0.605PheLys: 0.605 ± 0.465
2.42PheLeu: 2.42 ± 1.619
0.0PheMet: 0.0 ± 0.0
3.63PheAsn: 3.63 ± 0.18
3.63PhePro: 3.63 ± 0.18
0.0PheGln: 0.0 ± 0.0
1.815PheArg: 1.815 ± 0.525
2.42PheSer: 2.42 ± 0.12
2.42PheThr: 2.42 ± 0.12
1.815PheVal: 1.815 ± 0.525
1.21PheTrp: 1.21 ± 0.06
0.0PheTyr: 0.0 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
6.05GlyAla: 6.05 ± 2.039
1.815GlyCys: 1.815 ± 0.525
3.63GlyAsp: 3.63 ± 1.05
2.42GlyGlu: 2.42 ± 0.99
2.42GlyPhe: 2.42 ± 0.99
12.704GlyGly: 12.704 ± 0.195
2.42GlyHis: 2.42 ± 0.12
5.445GlyIle: 5.445 ± 1.904
1.815GlyLys: 1.815 ± 1.215
6.655GlyLeu: 6.655 ± 0.765
0.605GlyMet: 0.605 ± 0.405
3.63GlyAsn: 3.63 ± 1.559
4.235GlyPro: 4.235 ± 0.645
2.42GlyGln: 2.42 ± 0.99
7.864GlyArg: 7.864 ± 2.654
3.025GlySer: 3.025 ± 0.285
6.05GlyThr: 6.05 ± 2.039
7.864GlyVal: 7.864 ± 2.564
2.42GlyTrp: 2.42 ± 0.12
3.63GlyTyr: 3.63 ± 0.18
0.0GlyXaa: 0.0 ± 0.0
His
5.445HisAla: 5.445 ± 2.444
0.605HisCys: 0.605 ± 0.465
0.0HisAsp: 0.0 ± 0.0
0.0HisGlu: 0.0 ± 0.0
0.0HisPhe: 0.0 ± 0.0
1.815HisGly: 1.815 ± 0.345
0.0HisHis: 0.0 ± 0.0
3.025HisIle: 3.025 ± 1.155
0.0HisLys: 0.0 ± 0.0
1.815HisLeu: 1.815 ± 0.345
0.0HisMet: 0.0 ± 0.0
1.21HisAsn: 1.21 ± 0.81
2.42HisPro: 2.42 ± 0.99
0.0HisGln: 0.0 ± 0.0
3.025HisArg: 3.025 ± 0.585
1.21HisSer: 1.21 ± 0.06
0.605HisThr: 0.605 ± 0.465
5.445HisVal: 5.445 ± 1.904
1.21HisTrp: 1.21 ± 0.06
1.21HisTyr: 1.21 ± 0.06
0.0HisXaa: 0.0 ± 0.0
Ile
2.42IleAla: 2.42 ± 0.12
1.21IleCys: 1.21 ± 0.06
3.025IleAsp: 3.025 ± 2.024
3.63IleGlu: 3.63 ± 0.18
0.0IlePhe: 0.0 ± 0.0
4.235IleGly: 4.235 ± 1.964
1.21IleHis: 1.21 ± 0.06
0.605IleIle: 0.605 ± 0.405
0.605IleLys: 0.605 ± 0.405
3.63IleLeu: 3.63 ± 0.69
0.605IleMet: 0.605 ± 0.405
0.605IleAsn: 0.605 ± 0.465
1.21IlePro: 1.21 ± 0.06
1.21IleGln: 1.21 ± 0.06
2.42IleArg: 2.42 ± 0.12
2.42IleSer: 2.42 ± 0.12
1.21IleThr: 1.21 ± 0.06
2.42IleVal: 2.42 ± 0.75
0.0IleTrp: 0.0 ± 0.0
3.025IleTyr: 3.025 ± 0.285
0.0IleXaa: 0.0 ± 0.0
Lys
3.025LysAla: 3.025 ± 0.285
0.605LysCys: 0.605 ± 0.405
0.605LysAsp: 0.605 ± 0.465
1.815LysGlu: 1.815 ± 0.345
0.605LysPhe: 0.605 ± 0.465
1.815LysGly: 1.815 ± 0.345
1.21LysHis: 1.21 ± 0.81
0.605LysIle: 0.605 ± 0.465
1.815LysLys: 1.815 ± 0.345
3.63LysLeu: 3.63 ± 0.69
1.21LysMet: 1.21 ± 0.06
1.21LysAsn: 1.21 ± 0.93
1.815LysPro: 1.815 ± 0.525
1.815LysGln: 1.815 ± 1.215
2.42LysArg: 2.42 ± 0.12
1.815LysSer: 1.815 ± 0.345
0.0LysThr: 0.0 ± 0.0
1.21LysVal: 1.21 ± 0.06
0.605LysTrp: 0.605 ± 0.465
0.605LysTyr: 0.605 ± 0.465
0.0LysXaa: 0.0 ± 0.0
Leu
9.679LeuAla: 9.679 ± 2.129
1.815LeuCys: 1.815 ± 0.345
3.025LeuAsp: 3.025 ± 1.155
4.84LeuGlu: 4.84 ± 2.369
1.815LeuPhe: 1.815 ± 0.345
9.074LeuGly: 9.074 ± 2.624
3.025LeuHis: 3.025 ± 2.324
3.63LeuIle: 3.63 ± 2.429
3.63LeuLys: 3.63 ± 1.559
13.914LeuLeu: 13.914 ± 5.833
3.63LeuMet: 3.63 ± 1.05
4.84LeuAsn: 4.84 ± 0.63
6.655LeuPro: 6.655 ± 0.105
4.235LeuGln: 4.235 ± 1.095
9.679LeuArg: 9.679 ± 0.39
5.445LeuSer: 5.445 ± 0.165
5.445LeuThr: 5.445 ± 0.705
4.235LeuVal: 4.235 ± 2.384
0.605LeuTrp: 0.605 ± 0.405
3.025LeuTyr: 3.025 ± 0.285
0.0LeuXaa: 0.0 ± 0.0
Met
3.63MetAla: 3.63 ± 1.05
0.605MetCys: 0.605 ± 0.405
0.605MetAsp: 0.605 ± 0.465
1.21MetGlu: 1.21 ± 0.81
0.0MetPhe: 0.0 ± 0.0
1.815MetGly: 1.815 ± 0.345
1.21MetHis: 1.21 ± 0.81
0.605MetIle: 0.605 ± 0.465
0.605MetLys: 0.605 ± 0.405
2.42MetLeu: 2.42 ± 0.12
1.21MetMet: 1.21 ± 0.81
1.815MetAsn: 1.815 ± 0.345
0.605MetPro: 0.605 ± 0.465
0.605MetGln: 0.605 ± 0.465
1.815MetArg: 1.815 ± 0.525
2.42MetSer: 2.42 ± 0.99
1.21MetThr: 1.21 ± 0.06
1.21MetVal: 1.21 ± 0.06
0.605MetTrp: 0.605 ± 0.465
1.815MetTyr: 1.815 ± 0.525
0.0MetXaa: 0.0 ± 0.0
Asn
2.42AsnAla: 2.42 ± 0.12
1.815AsnCys: 1.815 ± 0.345
1.815AsnAsp: 1.815 ± 0.345
1.815AsnGlu: 1.815 ± 1.215
1.815AsnPhe: 1.815 ± 0.525
3.025AsnGly: 3.025 ± 0.585
1.21AsnHis: 1.21 ± 0.06
1.21AsnIle: 1.21 ± 0.06
0.605AsnLys: 0.605 ± 0.465
2.42AsnLeu: 2.42 ± 0.12
1.21AsnMet: 1.21 ± 0.06
0.605AsnAsn: 0.605 ± 0.465
2.42AsnPro: 2.42 ± 1.619
0.0AsnGln: 0.0 ± 0.0
3.025AsnArg: 3.025 ± 1.155
2.42AsnSer: 2.42 ± 0.12
1.21AsnThr: 1.21 ± 0.93
4.235AsnVal: 4.235 ± 1.514
0.605AsnTrp: 0.605 ± 0.405
1.815AsnTyr: 1.815 ± 0.345
0.0AsnXaa: 0.0 ± 0.0
Pro
5.445ProAla: 5.445 ± 0.705
1.21ProCys: 1.21 ± 0.06
0.605ProAsp: 0.605 ± 0.465
3.025ProGlu: 3.025 ± 1.454
3.025ProPhe: 3.025 ± 0.585
4.235ProGly: 4.235 ± 0.645
2.42ProHis: 2.42 ± 1.859
2.42ProIle: 2.42 ± 0.99
0.605ProLys: 0.605 ± 0.465
3.63ProLeu: 3.63 ± 1.559
1.21ProMet: 1.21 ± 0.06
0.605ProAsn: 0.605 ± 0.405
4.235ProPro: 4.235 ± 1.514
1.815ProGln: 1.815 ± 0.525
5.445ProArg: 5.445 ± 1.035
4.235ProSer: 4.235 ± 0.225
1.815ProThr: 1.815 ± 1.394
5.445ProVal: 5.445 ± 0.165
1.21ProTrp: 1.21 ± 0.81
1.21ProTyr: 1.21 ± 0.81
0.0ProXaa: 0.0 ± 0.0
Gln
4.235GlnAla: 4.235 ± 0.225
1.21GlnCys: 1.21 ± 0.81
0.0GlnAsp: 0.0 ± 0.0
0.0GlnGlu: 0.0 ± 0.0
1.21GlnPhe: 1.21 ± 0.06
2.42GlnGly: 2.42 ± 0.12
2.42GlnHis: 2.42 ± 0.75
0.0GlnIle: 0.0 ± 0.0
0.605GlnLys: 0.605 ± 0.465
0.0GlnLeu: 0.0 ± 0.0
0.605GlnMet: 0.605 ± 0.729
1.815GlnAsn: 1.815 ± 0.345
1.21GlnPro: 1.21 ± 0.93
3.025GlnGln: 3.025 ± 0.585
1.815GlnArg: 1.815 ± 0.525
3.025GlnSer: 3.025 ± 1.155
0.605GlnThr: 0.605 ± 0.465
0.605GlnVal: 0.605 ± 0.465
0.0GlnTrp: 0.0 ± 0.0
1.21GlnTyr: 1.21 ± 0.81
0.0GlnXaa: 0.0 ± 0.0
Arg
5.445ArgAla: 5.445 ± 1.904
1.21ArgCys: 1.21 ± 0.93
3.025ArgAsp: 3.025 ± 0.285
2.42ArgGlu: 2.42 ± 0.12
0.605ArgPhe: 0.605 ± 0.465
6.655ArgGly: 6.655 ± 1.634
3.025ArgHis: 3.025 ± 0.285
3.025ArgIle: 3.025 ± 1.155
2.42ArgLys: 2.42 ± 0.99
5.445ArgLeu: 5.445 ± 0.705
1.21ArgMet: 1.21 ± 0.93
3.025ArgAsn: 3.025 ± 0.285
1.21ArgPro: 1.21 ± 0.06
3.025ArgGln: 3.025 ± 0.585
7.864ArgArg: 7.864 ± 2.654
6.655ArgSer: 6.655 ± 2.714
6.655ArgThr: 6.655 ± 0.765
8.469ArgVal: 8.469 ± 2.189
0.605ArgTrp: 0.605 ± 0.405
1.815ArgTyr: 1.815 ± 1.215
0.0ArgXaa: 0.0 ± 0.0
Ser
3.63SerAla: 3.63 ± 0.18
1.21SerCys: 1.21 ± 0.06
4.235SerAsp: 4.235 ± 0.225
3.63SerGlu: 3.63 ± 0.18
0.605SerPhe: 0.605 ± 0.465
6.655SerGly: 6.655 ± 0.105
1.21SerHis: 1.21 ± 0.06
3.025SerIle: 3.025 ± 0.585
1.21SerLys: 1.21 ± 0.81
6.655SerLeu: 6.655 ± 2.714
1.21SerMet: 1.21 ± 0.06
1.21SerAsn: 1.21 ± 0.06
4.84SerPro: 4.84 ± 0.24
1.21SerGln: 1.21 ± 0.81
3.63SerArg: 3.63 ± 1.05
3.63SerSer: 3.63 ± 0.18
1.815SerThr: 1.815 ± 0.525
6.655SerVal: 6.655 ± 0.975
1.21SerTrp: 1.21 ± 0.81
1.815SerTyr: 1.815 ± 0.525
0.0SerXaa: 0.0 ± 0.0
Thr
6.655ThrAla: 6.655 ± 0.765
1.21ThrCys: 1.21 ± 0.93
1.21ThrAsp: 1.21 ± 0.06
1.21ThrGlu: 1.21 ± 0.06
5.445ThrPhe: 5.445 ± 0.705
2.42ThrGly: 2.42 ± 0.75
0.605ThrHis: 0.605 ± 0.405
1.21ThrIle: 1.21 ± 0.06
0.605ThrLys: 0.605 ± 0.465
6.05ThrLeu: 6.05 ± 0.3
1.815ThrMet: 1.815 ± 1.394
1.815ThrAsn: 1.815 ± 0.525
1.21ThrPro: 1.21 ± 0.06
1.815ThrGln: 1.815 ± 0.525
3.025ThrArg: 3.025 ± 1.454
1.21ThrSer: 1.21 ± 0.93
4.235ThrThr: 4.235 ± 0.225
5.445ThrVal: 5.445 ± 3.314
1.21ThrTrp: 1.21 ± 0.06
3.025ThrTyr: 3.025 ± 0.285
0.0ThrXaa: 0.0 ± 0.0
Val
10.284ValAla: 10.284 ± 1.664
2.42ValCys: 2.42 ± 0.99
3.025ValAsp: 3.025 ± 2.324
6.655ValGlu: 6.655 ± 0.765
1.21ValPhe: 1.21 ± 0.93
8.469ValGly: 8.469 ± 1.32
2.42ValHis: 2.42 ± 0.12
1.815ValIle: 1.815 ± 1.215
1.21ValLys: 1.21 ± 0.81
12.704ValLeu: 12.704 ± 1.065
3.025ValMet: 3.025 ± 0.227
2.42ValAsn: 2.42 ± 0.12
6.655ValPro: 6.655 ± 1.634
0.605ValGln: 0.605 ± 0.465
6.655ValArg: 6.655 ± 0.105
5.445ValSer: 5.445 ± 0.165
3.025ValThr: 3.025 ± 0.585
6.655ValVal: 6.655 ± 1.634
0.0ValTrp: 0.0 ± 0.0
1.21ValTyr: 1.21 ± 0.06
0.0ValXaa: 0.0 ± 0.0
Trp
1.815TrpAla: 1.815 ± 1.215
0.605TrpCys: 0.605 ± 0.405
0.605TrpAsp: 0.605 ± 0.405
0.605TrpGlu: 0.605 ± 0.405
0.0TrpPhe: 0.0 ± 0.0
0.605TrpGly: 0.605 ± 0.405
0.0TrpHis: 0.0 ± 0.0
1.21TrpIle: 1.21 ± 0.06
0.605TrpLys: 0.605 ± 0.465
4.84TrpLeu: 4.84 ± 0.24
0.605TrpMet: 0.605 ± 0.405
1.815TrpAsn: 1.815 ± 1.215
1.21TrpPro: 1.21 ± 0.81
0.605TrpGln: 0.605 ± 0.465
1.815TrpArg: 1.815 ± 0.525
0.605TrpSer: 0.605 ± 0.405
0.0TrpThr: 0.0 ± 0.0
0.605TrpVal: 0.605 ± 0.405
0.605TrpTrp: 0.605 ± 0.465
0.0TrpTyr: 0.0 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
6.655TyrAla: 6.655 ± 0.105
0.605TyrCys: 0.605 ± 0.465
1.815TyrAsp: 1.815 ± 0.525
1.21TyrGlu: 1.21 ± 0.81
1.21TyrPhe: 1.21 ± 0.06
1.815TyrGly: 1.815 ± 0.345
0.0TyrHis: 0.0 ± 0.0
1.21TyrIle: 1.21 ± 0.81
3.025TyrLys: 3.025 ± 0.285
4.235TyrLeu: 4.235 ± 1.964
0.605TyrMet: 0.605 ± 0.465
0.0TyrAsn: 0.0 ± 0.0
0.605TyrPro: 0.605 ± 0.405
0.605TyrGln: 0.605 ± 0.465
1.21TyrArg: 1.21 ± 0.06
1.815TyrSer: 1.815 ± 0.345
1.21TyrThr: 1.21 ± 0.06
3.025TyrVal: 3.025 ± 1.155
1.21TyrTrp: 1.21 ± 0.81
1.815TyrTyr: 1.815 ± 1.394
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 2 proteins (1654 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski